SMTL ID : 8s7k.1

M. tuberculosis gyrase holocomplex with 150 bp DNA and gepotidacin

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain C: D.537 Chain F: A.92 No protein-ligand interaction detected (PLIP) MG.2: 1 residues within 4Å: Chain D: D.537 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:D.537

1 x JHN: (3~{R})-3-[[4-(3,4-dihydro-2~{H}-pyrano[2,3-c]pyridin-6-ylmethylamino)piperidin-1-yl]methyl]-1,4,7-triazatricyclo[6.3.1.0^{4,12}]dodeca-6,8(12),9-triene-5,11-dione(Non-covalent)

JHN.3: 12 residues within 4Å: Chain A: A.77, M.80, D.88, M.126 Chain B: A.73, M.80, D.88, M.126 Chain E: C.56, C.57 Chain F: G.94, G.95 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:A.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gedeon, A. et al., M. tuberculosis gyrase holocomplex with 150 bp DNA and gepotidacin. To Be Published

Release Date

2025-10-08

Peptides

DNA gyrase subunit A: AB
DNA gyrase subunit B: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
A

C
B

D
D

DNA gyrase subunit A

DNA gyrase subunit B

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