- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-1-1-1-1-1-mer
- Ligands
- 2 x F43: FACTOR 430(Covalent)(Non-covalent)
- 1 x SHT: O-PHOSPHONO-N-{(2E)-7-[(2-SULFOETHYL)DITHIO]HEPT-2-ENOYL}-L-THREONINE(Non-covalent)
SHT.2: 14 residues within 4Å:- Chain B: L.120, R.123
- Chain C: F.361, Y.367, V.381
- Chain G: M.327, S.328, F.333, Y.336, F.446, Y.447, A.482, M.483
- Ligands: F43.4
9 PLIP interactions:5 interactions with chain G, 1 interactions with chain B, 3 interactions with chain C- Hydrophobic interactions: G:F.333, G:F.446, C:F.361, C:Y.367, C:Y.367
- Hydrogen bonds: G:S.328, G:Y.447, G:N.484
- Salt bridges: B:R.123
- 1 x COM: 1-THIOETHANESULFONIC ACID(Non-covalent)
- 1 x TP7: Coenzyme B
TP7.5: 19 residues within 4Å:- Chain D: F.361, F.362, Y.367, G.368, G.369, V.380, V.381
- Chain E: R.274, L.323, M.327, S.328, F.333, F.446, M.483, N.484, V.485
- Chain G: R.229, K.260, H.261
14 PLIP interactions:4 interactions with chain G, 7 interactions with chain D, 3 interactions with chain E- Hydrogen bonds: G:K.260, D:Y.367, D:G.369
- Salt bridges: G:R.229, G:K.260, G:K.260, D:H.379, E:R.274
- Hydrophobic interactions: D:F.362, D:Y.367, D:V.380, D:V.381, E:M.327, E:F.333
- 3 x S5Q: FeFe cofactor(Non-covalent)
S5Q.6: 15 residues within 4Å:- Chain F: Y.17, P.141, E.142, G.143
- Chain H: P.78, H.84, A.112, G.113, M.137, G.138, N.139, F.140, C.143, K.147, R.178
2 PLIP interactions:2 interactions with chain H,- Metal complexes: H:H.84, H:C.143
S5Q.7: 14 residues within 4Å:- Chain H: L.85, C.90, S.93, R.97, M.105
- Chain I: V.46, C.48, R.49, L.60, A.61, A.67, C.91, R.98, V.106
2 PLIP interactions:2 interactions with chain I,- Metal complexes: I:C.48, I:C.91
S5Q.8: 14 residues within 4Å:- Chain E: E.152
- Chain I: M.79, R.84, H.85, G.112, G.113, G.114, F.148, G.149, N.150, V.151, H.154, K.158, R.213
4 PLIP interactions:2 interactions with chain E, 2 interactions with chain I,- Salt bridges: E:E.152, E:E.152
- Metal complexes: I:H.85, I:H.154
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramirez-Amador, F. et al., Structure of the ATP-driven methyl-coenzyme M reductase activation complex. Nature (2025)
- Release Date
- 2025-02-26
- Peptides
- Methyl-coenzyme M reductase subunit gamma: AB
Methyl-coenzyme M reductase subunit beta: CD
Methyl-coenzyme M reductase subunit alpha: EG
Methanogenesis marker protein 17: F
Methanogenesis marker protein 7: H
Methyl-coenzyme M reductase operon protein C: I
UPF0288 protein MmarC6_0796: J
DUF2098 domain-containing protein: K - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
ED
DE
CG
FF
GH
HI
IJ
JK
L
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-1-1-1-1-1-mer
- Ligands
- 2 x F43: FACTOR 430(Covalent)(Non-covalent)
- 1 x SHT: O-PHOSPHONO-N-{(2E)-7-[(2-SULFOETHYL)DITHIO]HEPT-2-ENOYL}-L-THREONINE(Non-covalent)
- 1 x COM: 1-THIOETHANESULFONIC ACID(Non-covalent)
- 1 x TP7: Coenzyme B
- 3 x S5Q: FeFe cofactor(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramirez-Amador, F. et al., Structure of the ATP-driven methyl-coenzyme M reductase activation complex. Nature (2025)
- Release Date
- 2025-02-26
- Peptides
- Methyl-coenzyme M reductase subunit gamma: AB
Methyl-coenzyme M reductase subunit beta: CD
Methyl-coenzyme M reductase subunit alpha: EG
Methanogenesis marker protein 17: F
Methanogenesis marker protein 7: H
Methyl-coenzyme M reductase operon protein C: I
UPF0288 protein MmarC6_0796: J
DUF2098 domain-containing protein: K - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
ED
DE
CG
FF
GH
HI
IJ
JK
L