SMTL ID : 8s99.2 (2 other biounits)

Crystal structure of the TYK2 pseudokinase domain in complex with compound 11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

1 x ZS3: (8S)-N-[(1R,2S)-2-fluorocyclopropyl]-5-{[(1M,2'M)-3'-fluoro-2-oxo-2H-[1,2'-bipyridin]-3-yl]amino}-7-(methylamino)pyrazolo[1,5-a]pyrimidine-3-carboxamide(Non-covalent)

ZS3.1: 17 residues within 4Å: Chain A: L.21, G.22, Q.23, V.29, V.66, K.68, E.114, Y.115, V.116, E.117, G.119, P.120, V.123, R.164, N.165, L.167, S.184 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.21, A:V.29, A:V.123, A:L.167 Hydrogen bonds: A:L.21, A:Q.23, A:K.68, A:V.116, A:V.116

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: D.122, C.162, G.163, R.164, W.204, E.232 Ligands: ACT.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.164 Water bridges: A:R.126, A:E.232 EDO.3: 8 residues within 4Å: Chain A: G.159, N.160, V.161, L.190, R.201, W.204, L.205 Ligands: ACT.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.161, A:V.161, A:R.201

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 6 residues within 4Å: Chain A: N.160, C.162, R.201, W.204 Ligands: EDO.2, EDO.3 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.204 Water bridges: A:T.25, A:T.25, A:N.160, A:R.201 Salt bridges: A:R.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leit, S. et al., Discovery of a Potent and Selective Tyrosine Kinase 2 Inhibitor: TAK-279. J.Med.Chem. (2023)

Release Date

2023-07-26

Peptides

Non-receptor tyrosine-protein kinase TYK2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Non-receptor tyrosine-protein kinase TYK2

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