SMTL ID : 8s9q.1

HIV-1 Integrase Catalytic Core Domain (CCD) F185H Mutant Complexed with STP03-0404

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

homo-dimer

Ligands

2 x WBV: (2S)-tert-butoxy{4-(4-chlorophenyl)-2,3,6-trimethyl-1-[(1-methyl-1H-pyrazol-4-yl)methyl]-1H-pyrrolo[2,3-b]pyridin-5-yl}acetic acid(Non-covalent)

WBV.1: 16 residues within 4Å: Chain A: Q.119, A.120, E.121, H.122, K.124, T.125, M.129 Chain B: Q.46, A.49, Y.50, L.53, T.75, T.76, A.79, A.80, W.83 9 PLIP interactions: 3 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:Q.46, B:Y.50, B:T.76, A:T.125 Hydrogen bonds: A:E.121, A:H.122, A:T.125, A:T.125 Salt bridges: A:H.122 WBV.2: 16 residues within 4Å: Chain A: Q.46, A.49, Y.50, L.53, T.75, T.76, A.79, A.80, W.83 Chain B: Q.119, A.120, E.121, H.122, K.124, T.125, M.129 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:T.125, A:Q.46, A:Y.50, A:T.76 Hydrogen bonds: B:E.121, B:H.122, B:T.125, B:T.125 Salt bridges: B:H.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dinh, T. et al., HIV-1 Integrase Catalytic Core Domain Complexed with STP-0404. To Be Published

Release Date

2024-02-07

Peptides

Integrase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Integrase

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