SMTL ID : 8s9r.1

SAL2, Staphylococcus aureus lipase 2 (geh, lip2), apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.69, H.89, H.95, D.241 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.69, A:D.69, A:H.89, A:H.95, A:D.241 ZN.4: 4 residues within 4Å: Chain B: D.69, H.89, H.95, D.241 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.69, B:D.69, B:H.89, B:H.95, B:D.241 ZN.8: 4 residues within 4Å: Chain C: D.69, H.89, H.95, D.241 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.69, C:D.69, C:H.89, C:H.95, C:D.241 ZN.11: 4 residues within 4Å: Chain D: D.69, H.89, H.95, D.241 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.69, D:D.69, D:H.89, D:H.95, D:D.241

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: R.50, H.57, Y.77, K.103, I.105 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.77 Water bridges: A:R.50, A:Q.58 Salt bridges: A:R.50, A:H.57, A:K.103 PO4.5: 4 residues within 4Å: Chain B: R.50, H.57, Y.77, I.105 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.77 Water bridges: B:R.50 Salt bridges: B:R.50, B:H.57 PO4.6: 2 residues within 4Å: Chain B: H.276, N.284 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.284 Salt bridges: B:H.276, A:K.368 PO4.9: 5 residues within 4Å: Chain C: R.50, H.57, Y.77, K.103, I.105 5 PLIP interactions: 5 interactions with chain C Water bridges: C:R.50, C:Q.58 Salt bridges: C:R.50, C:H.57, C:K.103 PO4.12: 4 residues within 4Å: Chain D: R.50, H.57, Y.77, I.105 3 PLIP interactions: 3 interactions with chain D Water bridges: D:R.50 Salt bridges: D:R.50, D:H.57 PO4.13: 2 residues within 4Å: Chain D: H.276, N.284 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:N.284 Salt bridges: D:H.276, C:K.368

4 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: G.288, D.353, D.356, D.361, D.364 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.288, A:D.353, A:D.356, A:D.361, A:D.364 CA.7: 5 residues within 4Å: Chain B: G.288, D.353, D.356, D.361, D.364 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:G.288, B:D.353, B:D.356, B:D.361, B:D.364 CA.10: 5 residues within 4Å: Chain C: G.288, D.353, D.356, D.361, D.364 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:G.288, C:D.353, C:D.356, C:D.361, C:D.364 CA.14: 5 residues within 4Å: Chain D: G.288, D.353, D.356, D.361, D.364 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:G.288, D:D.353, D:D.356, D:D.361, D:D.364

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fellner, M., SAL2, Staphylococcus aureus lipase 2 (geh, lip2), apo form. To Be Published

Release Date

2024-04-10

Peptides

Lipase 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Lipase 2