SMTL ID : 8sbb.1

Cryo-EM structure of FtAlkB

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: H.181, E.281, H.282, H.321, H.325 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.181, A:H.282, A:H.321, A:H.325 FE.2: 5 residues within 4Å: Chain A: H.147, H.151, H.177, H.182, H.324 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.147, A:H.151, A:H.177, A:H.182, A:H.324

1 x D12: DODECANE(Non-covalent)

D12.3: 11 residues within 4Å: Chain A: W.62, I.137, G.140, L.141, H.177, Q.273, L.274, A.277, N.278, E.281, L.315 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.62, A:W.62, A:I.137, A:L.141, A:A.277, A:L.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, X. et al., Structure and mechanism of the alkane-oxidizing enzyme AlkB. Nat Commun (2023)

Release Date

2023-04-26

Peptides

Alkane 1-monooxygenase: A
Nanobody: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Alkane 1-monooxygenase

Nanobody