SMTL ID : 8sbf.1

Full-length structure of the LysR-type transcriptional regulator, ACIAD0746, from Acinetobacter baylyi

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

homo-tetramer

Ligands

3 x NA: SODIUM ION(Non-functional Binders)

NA.1: 7 residues within 4Å: Chain A: V.14, A.15, G.18, F.50, L.57, Q.58, L.59 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.15 Water bridges: A:L.59 NA.4: 6 residues within 4Å: Chain B: I.146, E.147, G.148, P.268, L.269, H.270 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.146, B:G.148 NA.10: 3 residues within 4Å: Chain C: E.42, P.48, R.52 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.42, C:R.52, C:R.52

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.103, H.224 Chain B: D.103, H.224 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:D.103, B:D.103, H2O.3, H2O.8 MG.3: 3 residues within 4Å: Chain B: E.164, E.264, T.266 No protein-ligand interaction detected (PLIP) MG.8: 2 residues within 4Å: Chain C: E.264, T.266 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.264 MG.9: 2 residues within 4Å: Chain C: R.2, D.43 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.43, C:D.43, H2O.15, H2O.17, H2O.17

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 10 residues within 4Å: Chain C: E.191, I.193, R.219, L.220, I.231, G.235, L.236, G.237 Chain D: L.114, P.118 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.191, C:R.219 GOL.6: 3 residues within 4Å: Chain C: T.30, S.32, A.33 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.30 GOL.7: 7 residues within 4Å: Chain B: R.2, M.3 Chain C: L.5, L.74, C.77, E.78, E.81 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:L.74, C:E.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Momany, C. et al., FinR, a LysR-type transcriptional regulator involved in sulfur homeostasis with homologs in diverse microorganisms. To Be Published

Release Date

2024-04-17

Peptides

Putative transcriptional regulator (LysR family): ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

D
D

Putative transcriptional regulator (LysR family)