SMTL ID : 8sbm.1 (1 other biounit)

Crystal structure of the wild-type Catalytic ATP-binding domain of Mtb DosS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: V.53, H.55, D.77, E.85 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.55, A:D.77, A:E.85, A:E.85, H2O.1 ZN.6: 4 residues within 4Å: Chain A: D.68, D.69, D.70, C.72 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.68, A:D.68, A:D.70, A:C.72, H2O.2

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: G.1, R.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.1 Water bridges: A:R.3 EDO.3: 3 residues within 4Å: Chain A: D.9, A.13, V.24 No protein-ligand interaction detected (PLIP) EDO.4: 2 residues within 4Å: Chain A: S.109, G.115 No protein-ligand interaction detected (PLIP) EDO.5: 3 residues within 4Å: Chain A: T.2, S.35, D.39 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.1, A:D.39 Water bridges: A:R.7, A:R.7 EDO.7: 4 residues within 4Å: Chain A: F.15, R.46, E.47, S.50 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.47 Water bridges: A:R.46, A:E.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Larson, G.W. et al., Understanding ATP Binding to DosS Catalytic Domain with a Short ATP-Lid. Biochemistry (2023)

Release Date

2023-11-08

Peptides

GAF domain-containing protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GAF domain-containing protein

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