SMTL ID : 8sbq.1

FphE, Staphylococcus aureus fluorophosphonate-binding serine hydrolases E, fluorophosphonate JB101 bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x ZUV: ethyl (R)-(10-{[(but-3-yn-1-yl)carbamoyl]oxy}decyl)phosphonofluoridate

ZUV.1: 16 residues within 4Å: Chain A: G.30, A.31, N.32, S.106, S.107 Chain B: L.159, E.160, M.163, K.164, G.167, M.180, S.181, T.197, W.200, H.260, Y.263 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:L.159, B:M.163, B:K.164, B:M.180 Water bridges: B:T.197 Hydrogen bonds: A:A.31, A:S.107 ZUV.4: 17 residues within 4Å: Chain A: L.159, E.160, M.163, F.166, G.167, L.170, I.172, M.180, S.181, W.200, H.260, Y.263 Chain B: G.30, A.31, N.32, S.106, S.107 12 PLIP interactions: 9 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:L.159, A:E.160, A:M.163, A:F.166, A:F.166, A:L.170, A:I.172, A:W.200, B:A.31 Hydrogen bonds: A:M.180, B:A.31, B:S.107

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: N.276 No protein-ligand interaction detected (PLIP) MG.3: 1 residues within 4Å: Chain A: D.139 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.139, H2O.9 MG.5: 1 residues within 4Å: Chain B: H.152 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.152, H2O.13, H2O.13, H2O.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fellner, M., FphE, Staphylococcus aureus fluorophosphonate-binding serine hydrolases E, fluorophosphonate JB101 bound. To Be Published

Release Date

2024-04-17

Peptides

Fluorophosphonate-binding serine hydrolases E: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fluorophosphonate-binding serine hydrolases E

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