SMTL ID : 8sef.1

Crystal structure of Cy137C02, a monoclonal antibody isolated from macaques immunized with an Epstein-Barr virus glycoprotein 350 (gp350) nanoparticle vaccine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.47 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: H.171 Chain B: S.142, D.143 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:H.171 Hydrogen bonds: B:S.142

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: E.16, T.17 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.17 GOL.3: 2 residues within 4Å: Chain A: T.58, Y.60 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.58, A:Y.60 GOL.4: 7 residues within 4Å: Chain A: R.38, E.46, S.63, L.64, R.67, A.89, D.90 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.38, A:E.46, A:S.63, A:R.67, A:D.90 GOL.5: 3 residues within 4Å: Chain B: R.56, S.65, G.66 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.56, B:R.56, B:S.65, B:S.65 GOL.6: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.54 GOL.7: 5 residues within 4Å: Chain B: E.85, T.109, Y.145, K.171, Y.177 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.85, B:T.109, B:K.171 GOL.8: 5 residues within 4Å: Chain B: A.117, P.118, H.202, E.203, S.205 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.203, B:E.203, B:S.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joyce, M.G. et al., Crystal structure of Cy137C02, a monoclonal antibody isolated from macaques immunized with an Epstein-Barr virus glycoprotein 350 (gp350) nanoparticle vaccine. To Be Published

Release Date

2024-04-17

Peptides

Cy137C02 Fab heavy chain: A
Cy137C02 Fab light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

Cy137C02 Fab heavy chain

Cy137C02 Fab light chain

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