SMTL ID : 8sfe.1

Open state CCT-G beta 5 complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-2-2-2-mer

Ligands

16 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)(Covalent)

ADP.1: 18 residues within 4Å: Chain A: L.22, G.23, P.24, D.74, G.75, T.76, T.77, T.138, T.142, K.143, G.394, A.395, G.396, L.435, V.463, L.465, V.478, D.480 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.23, A:G.75, A:T.76, A:T.77, A:T.77, A:T.77, A:S.78, A:A.395, A:G.396, A:D.480 Salt bridges: A:K.143, A:K.143 ADP.2: 20 residues within 4Å: Chain B: G.23, P.24, D.43, G.44, N.45, G.73, D.74, G.75, T.76, T.77, S.78, T.138, T.142, K.143, G.394, A.395, G.396, L.465, V.478, D.480 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:G.23, B:G.44, B:N.45, B:D.74, B:T.76, B:T.77, B:T.77, B:T.77, B:T.77, B:T.142, B:A.395, B:G.396, B:D.480 Salt bridges: B:K.143, B:K.143 ADP.3: 13 residues within 4Å: Chain C: L.35, G.36, P.37, D.56, D.87, G.88, T.89, T.90, G.411, L.451, L.489, V.502, E.504 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:G.36, C:G.88, C:T.89, C:T.89, C:T.90, C:T.90, C:G.411, C:E.504 ADP.4: 14 residues within 4Å: Chain D: T.41, L.42, G.43, P.44, D.96, G.97, T.99, S.167, G.408, G.409, L.477, M.479, M.487, K.499 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:G.43, D:D.96, D:D.96, D:S.167, D:G.409 ADP.5: 12 residues within 4Å: Chain E: L.34, P.36, G.85, D.86, G.87, T.88, T.89, S.90, G.407, L.447, V.477, V.490 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:G.87, E:T.88, E:T.89, E:T.89, E:S.90, E:S.90, E:S.90, E:G.407 ADP.6: 15 residues within 4Å: Chain F: L.51, G.52, P.53, D.72, D.103, G.104, T.105, T.106, G.421, L.461, I.490, C.492, L.493, V.505, E.507 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:G.52, F:D.72, F:D.72, F:D.103, F:G.104, F:T.106, F:G.107, F:G.421, F:E.507 ADP.7: 16 residues within 4Å: Chain G: L.39, G.40, P.41, D.91, G.92, T.93, T.94, S.95, G.408, G.409, G.410, L.449, V.478, N.479, G.480, E.495 10 PLIP interactions: 10 interactions with chain G Hydrogen bonds: G:G.40, G:G.92, G:T.93, G:T.94, G:S.95, G:S.95, G:G.409, G:G.410, G:G.480, G:E.495 ADP.8: 17 residues within 4Å: Chain H: T.39, L.40, G.41, P.42, D.61, D.92, G.93, T.94, T.95, T.161, G.408, G.409, G.410, V.477, I.479, E.494, R.499 9 PLIP interactions: 9 interactions with chain H Hydrogen bonds: H:T.39, H:G.41, H:D.92, H:G.93, H:T.94, H:G.409, H:G.410, H:E.494, H:R.499 ADP.9: 17 residues within 4Å: Chain I: Y.46, G.47, P.48, D.98, G.99, T.100, N.101, M.168, S.169, K.170, G.410, G.411, L.451, L.479, I.481, I.496, D.498 12 PLIP interactions: 12 interactions with chain I Hydrogen bonds: I:G.99, I:T.100, I:T.100, I:T.100, I:N.101, I:N.101, I:S.169, I:G.411, I:D.498, I:D.498 Salt bridges: I:K.170, I:K.170 ADP.10: 13 residues within 4Å: Chain J: L.35, G.36, G.57, D.87, G.88, T.89, T.90, G.411, L.451, L.487, L.489, V.502, E.504 8 PLIP interactions: 8 interactions with chain J Hydrogen bonds: J:G.36, J:G.57, J:G.88, J:T.89, J:T.89, J:G.411, J:E.504, J:E.504 ADP.11: 15 residues within 4Å: Chain K: L.42, G.43, P.44, D.65, D.96, G.97, T.98, T.99, S.167, G.409, G.410, I.449, M.479, I.492, E.494 9 PLIP interactions: 9 interactions with chain K Hydrogen bonds: K:D.65, K:D.65, K:G.97, K:T.98, K:T.99, K:T.99, K:S.167, K:G.409, K:G.410 ADP.12: 16 residues within 4Å: Chain L: L.34, G.35, P.36, D.86, G.87, T.88, T.89, S.90, G.406, G.407, L.447, I.475, V.477, R.478, V.490, Q.492 12 PLIP interactions: 12 interactions with chain L Hydrogen bonds: L:G.35, L:D.86, L:G.87, L:T.88, L:T.88, L:T.89, L:T.89, L:T.89, L:S.90, L:G.407, L:Q.492, L:Q.492 ADP.13: 15 residues within 4Å: Chain M: L.51, G.52, P.53, D.72, G.102, D.103, G.104, T.105, T.106, G.107, T.170, G.421, L.461, C.492, V.505 8 PLIP interactions: 8 interactions with chain M Hydrogen bonds: M:G.52, M:G.102, M:T.105, M:T.106, M:T.106, M:T.106, M:G.107, M:G.421 ADP.14: 11 residues within 4Å: Chain N: L.39, G.40, P.41, D.91, G.92, T.94, G.408, G.409, V.478, G.480, E.495 10 PLIP interactions: 10 interactions with chain N Hydrogen bonds: N:G.40, N:D.91, N:G.92, N:T.93, N:T.94, N:G.409, N:G.410, N:G.480, N:E.495, N:E.495 ADP.15: 13 residues within 4Å: Chain O: L.40, G.41, P.42, D.92, T.95, S.96, A.162, G.408, G.409, L.449, I.479, E.494, R.499 8 PLIP interactions: 8 interactions with chain O Hydrogen bonds: O:G.41, O:D.92, O:D.92, O:D.92, O:A.162, O:G.409, O:E.494, O:R.499 ADP.16: 19 residues within 4Å: Chain P: A.45, Y.46, G.47, P.48, D.98, G.99, T.100, N.101, T.165, M.168, S.169, K.170, G.410, G.411, L.451, I.481, I.496, D.498, K.503 14 PLIP interactions: 14 interactions with chain P Hydrogen bonds: P:A.45, P:Y.46, P:G.47, P:D.98, P:D.98, P:G.99, P:T.100, P:F.102, P:S.169, P:G.411, P:D.498, P:K.503 Salt bridges: P:K.170, P:K.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, S. et al., Visualizing the chaperone-mediated folding trajectory of the G protein beta 5 beta-propeller. Mol.Cell (2023)

Release Date

2023-10-25

Peptides

T-complex protein 1 subunit zeta: AB
T-complex protein 1 subunit alpha: CJ
T-complex protein 1 subunit beta: DK
T-complex protein 1 subunit delta: EL
T-complex protein 1 subunit epsilon: FM
T-complex protein 1 subunit gamma: GN
T-complex protein 1 subunit eta: HO
T-complex protein 1 subunit theta: IP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
z

B
Z

C
a

J
A

D
b

K
B

E
d

L
D

F
e

M
E

G
g

N
G

H
h

O
H

I
q

P
Q

T-complex protein 1 subunit zeta

T-complex protein 1 subunit alpha

T-complex protein 1 subunit beta

T-complex protein 1 subunit delta

T-complex protein 1 subunit epsilon

T-complex protein 1 subunit gamma

T-complex protein 1 subunit eta

T-complex protein 1 subunit theta

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