SMTL ID : 8sgp.1

human liver mitochondrial Medium-chain specific acyl-CoA dehydrogenase

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 25 residues within 4Å: Chain A: Y.158, V.160, T.161, G.166, S.167, W.191, T.193, N.239, I.396, I.399, Y.400, E.401, T.403, Q.405 Chain B: R.306, T.308, F.309, L.313, H.316, I.319, Q.374, I.375, G.377, G.378 Chain D: Q.317 23 PLIP interactions: 15 interactions with chain A, 6 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: A:W.191, A:Y.400 Hydrogen bonds: A:Y.158, A:V.160, A:T.161, A:T.161, A:G.166, A:S.167, A:T.193, A:T.193, A:E.401, A:G.402, A:T.403, A:T.403, A:Q.405, B:Q.374, B:Q.374, B:G.378, D:Q.317, D:Q.317 Salt bridges: B:R.306, B:R.306 pi-Stacking: B:H.316 FAD.2: 26 residues within 4Å: Chain A: R.306, T.308, F.309, L.313, H.316, I.319, Q.374, I.375, L.376, G.377, G.378 Chain B: Y.158, V.160, T.161, G.166, S.167, W.191, T.193, N.239, I.396, I.399, Y.400, E.401, T.403, Q.405 Chain C: Q.317 22 PLIP interactions: 13 interactions with chain B, 7 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: B:W.191, B:Y.400 Hydrogen bonds: B:Y.158, B:V.160, B:T.161, B:T.161, B:G.166, B:S.167, B:T.193, B:E.401, B:G.402, B:T.403, B:Q.405, A:T.308, A:Q.374, A:Q.374, A:G.378, C:Q.317, C:Q.317 Salt bridges: A:R.306, A:R.306 pi-Stacking: A:H.316 FAD.3: 26 residues within 4Å: Chain B: Q.317 Chain C: Y.158, V.160, T.161, G.166, S.167, W.191, T.193, N.239, I.396, I.399, Y.400, E.401, T.403, Q.405 Chain D: R.306, T.308, F.309, L.313, H.316, I.319, Q.374, I.375, L.376, G.377, G.378 23 PLIP interactions: 15 interactions with chain C, 6 interactions with chain D, 2 interactions with chain B Hydrophobic interactions: C:W.191, C:Y.400 Hydrogen bonds: C:Y.158, C:V.160, C:T.161, C:T.161, C:G.166, C:S.167, C:T.193, C:T.193, C:E.401, C:G.402, C:T.403, C:T.403, C:Q.405, D:Q.374, D:Q.374, D:G.378, B:Q.317, B:Q.317 Salt bridges: D:R.306, D:R.306 pi-Stacking: D:H.316 FAD.4: 26 residues within 4Å: Chain A: Q.317 Chain C: R.306, T.308, F.309, L.313, H.316, I.319, Q.374, I.375, L.376, G.377, G.378 Chain D: Y.158, V.160, T.161, G.166, S.167, W.191, T.193, N.239, I.396, I.399, Y.400, E.401, T.403, Q.405 22 PLIP interactions: 13 interactions with chain D, 7 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: D:W.191, D:Y.400 Hydrogen bonds: D:Y.158, D:V.160, D:T.161, D:T.161, D:G.166, D:S.167, D:T.193, D:E.401, D:G.402, D:T.403, D:Q.405, C:T.308, C:Q.374, C:Q.374, C:G.378, A:Q.317, A:Q.317 Salt bridges: C:R.306, C:R.306 pi-Stacking: C:H.316

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., High-Resolution Structural Proteomics of Mitochondria Using the 'Build and Retrieve' Methodology. Mol.Cell Proteomics (2023)

Release Date

2024-02-21

Peptides

Medium-chain specific acyl-CoA dehydrogenase, mitochondrial: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Medium-chain specific acyl-CoA dehydrogenase, mitochondrial

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