SMTL ID : 8sgq.1

CCT G beta 5 complex intermediate state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-2-2-2-mer

Ligands

16 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 20 residues within 4Å: Chain A: N.21, L.22, G.23, P.24, D.43, D.74, G.75, T.76, T.77, S.78, T.138, T.142, K.143, G.394, A.395, L.435, V.463, L.465, V.478, D.480 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.23, A:D.74, A:G.75, A:T.76, A:T.76, A:T.77, A:S.78, A:A.395, A:G.396, A:D.480 Salt bridges: A:K.143, A:K.143 ADP.2: 18 residues within 4Å: Chain B: L.22, G.23, P.24, D.43, G.44, N.45, D.74, G.75, T.76, T.77, S.78, T.138, T.142, K.143, A.395, G.396, L.465, V.478 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:G.23, B:D.43, B:D.43, B:G.44, B:N.45, B:D.74, B:T.77, B:T.77, B:T.77, B:S.78, B:A.395, B:G.396 Salt bridges: B:K.143, B:K.143 ADP.3: 13 residues within 4Å: Chain C: L.35, G.36, P.37, D.56, G.57, G.86, D.87, G.88, T.89, T.90, G.411, L.489, E.504 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:G.36, C:G.57, C:G.86, C:G.88, C:T.89, C:T.90, C:E.504 ADP.4: 12 residues within 4Å: Chain D: L.39, G.40, P.41, D.91, G.92, T.93, T.94, G.408, G.409, V.478, G.480, E.495 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:G.40, D:D.91, D:G.92, D:T.93, D:G.409, D:G.480, D:E.495 ADP.5: 15 residues within 4Å: Chain E: L.29, G.30, P.31, D.50, G.80, D.81, G.82, T.83, T.84, T.150, G.398, L.438, I.468, V.481, E.483 10 PLIP interactions: 10 interactions with chain E Hydrogen bonds: E:T.28, E:G.30, E:G.80, E:D.81, E:G.82, E:T.83, E:T.84, E:T.150, E:E.483, E:E.483 ADP.6: 18 residues within 4Å: Chain F: Y.19, P.21, D.40, D.71, G.72, T.73, N.74, T.138, M.141, S.142, K.143, D.366, G.383, G.384, L.424, I.454, I.469, D.471 11 PLIP interactions: 11 interactions with chain F Hydrogen bonds: F:D.40, F:G.72, F:T.73, F:T.73, F:N.74, F:N.74, F:S.142, F:G.384, F:D.471 Salt bridges: F:K.143, F:K.143 ADP.7: 14 residues within 4Å: Chain G: L.35, G.36, D.56, G.57, D.87, G.88, T.89, T.90, G.411, L.451, L.487, L.489, V.502, E.504 9 PLIP interactions: 9 interactions with chain G Hydrogen bonds: G:G.36, G:G.57, G:G.88, G:T.89, G:T.90, G:T.90, G:G.411, G:E.504, G:E.504 ADP.8: 11 residues within 4Å: Chain H: G.40, P.41, D.91, G.92, T.93, T.94, S.95, G.409, V.478, G.480, E.495 8 PLIP interactions: 8 interactions with chain H Hydrogen bonds: H:D.91, H:G.92, H:T.93, H:S.95, H:G.409, H:G.480, H:E.495, H:E.495 ADP.9: 14 residues within 4Å: Chain I: T.28, L.29, G.30, P.31, D.50, G.51, D.81, G.82, T.84, S.85, T.150, G.398, L.438, I.468 10 PLIP interactions: 10 interactions with chain I Hydrogen bonds: I:G.30, I:D.50, I:G.51, I:D.81, I:T.83, I:T.84, I:T.84, I:T.150, I:G.398, I:I.468 ADP.10: 17 residues within 4Å: Chain J: A.18, Y.19, G.20, P.21, D.71, G.72, T.73, N.74, T.138, M.141, S.142, K.143, G.384, L.424, I.454, I.469, D.471 13 PLIP interactions: 13 interactions with chain J Hydrogen bonds: J:A.18, J:Y.19, J:G.20, J:D.71, J:D.71, J:G.72, J:T.73, J:N.74, J:F.75, J:S.142, J:G.384 Salt bridges: J:K.143, J:K.143 ADP.11: 19 residues within 4Å: Chain K: T.41, L.42, G.43, P.44, D.65, D.96, G.97, T.98, T.99, S.100, T.164, T.165, S.167, S.168, K.169, G.409, M.479, I.492, E.494 12 PLIP interactions: 12 interactions with chain K Hydrogen bonds: K:G.43, K:G.97, K:T.98, K:T.98, K:T.99, K:S.100, K:S.100, K:S.100, K:S.167, K:S.167, K:S.168, K:E.494 ADP.12: 19 residues within 4Å: Chain L: L.34, P.36, D.55, D.86, G.87, T.88, T.89, T.151, S.152, N.154, S.155, K.156, D.389, G.407, G.408, I.475, V.477, V.490, Q.492 12 PLIP interactions: 12 interactions with chain L Hydrogen bonds: L:G.87, L:T.88, L:T.88, L:T.89, L:T.89, L:N.154, L:S.155, L:G.407, L:G.408, L:Q.492 Salt bridges: L:K.156, L:K.156 ADP.13: 16 residues within 4Å: Chain M: S.50, L.51, G.52, P.53, D.72, D.103, G.104, T.105, T.106, T.170, S.174, K.175, G.421, C.492, V.505, E.507 12 PLIP interactions: 12 interactions with chain M Hydrogen bonds: M:S.50, M:G.52, M:D.72, M:D.103, M:G.104, M:T.105, M:T.106, M:T.106, M:S.174, M:G.421 Salt bridges: M:K.175, M:K.175 ADP.14: 17 residues within 4Å: Chain N: T.41, L.42, G.43, P.44, D.65, D.96, G.97, T.98, T.99, S.100, T.164, S.167, S.168, K.169, G.409, I.492, E.494 15 PLIP interactions: 15 interactions with chain N Hydrogen bonds: N:G.43, N:D.65, N:G.97, N:T.99, N:T.99, N:S.100, N:S.100, N:S.100, N:S.100, N:S.100, N:S.167, N:S.167, N:S.168, N:E.494 Salt bridges: N:K.169 ADP.15: 22 residues within 4Å: Chain O: S.33, L.34, G.35, P.36, D.55, D.86, G.87, T.88, T.89, S.90, T.151, N.154, S.155, K.156, D.389, G.406, G.407, I.475, V.477, R.478, V.490, Q.492 18 PLIP interactions: 18 interactions with chain O Hydrogen bonds: O:D.55, O:D.55, O:D.55, O:D.86, O:G.87, O:T.88, O:T.89, O:T.89, O:S.90, O:N.154, O:S.155, O:D.389, O:G.407, O:V.477, O:R.478, O:Q.492 Salt bridges: O:K.156, O:K.156 ADP.16: 21 residues within 4Å: Chain P: S.50, L.51, G.52, P.53, N.71, D.72, D.103, G.104, T.105, T.106, T.170, T.171, S.174, K.175, G.420, G.421, I.490, C.492, M.500, V.505, E.507 12 PLIP interactions: 12 interactions with chain P Hydrogen bonds: P:G.52, P:G.104, P:T.105, P:T.106, P:T.106, P:T.106, P:S.174, P:S.174, P:G.421, P:E.507 Salt bridges: P:K.175, P:K.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, S. et al., Visualizing the chaperone-mediated folding trajectory of the G protein beta 5 beta-propeller. Mol.Cell (2023)

Release Date

2023-11-01

Peptides

T-complex protein 1 subunit zeta: AB
T-complex protein 1 subunit alpha: CG
T-complex protein 1 subunit gamma: DH
T-complex protein 1 subunit eta, N-terminally processed: EI
T-complex protein 1 subunit theta: FJ
T-complex protein 1 subunit beta: KN
T-complex protein 1 subunit delta: LO
T-complex protein 1 subunit epsilon: MP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
z

B
Z

C
a

G
A

D
g

H
G

E
h

I
H

F
q

J
Q

K
B

N
b

L
D

O
d

M
E

P
e

T-complex protein 1 subunit zeta

T-complex protein 1 subunit alpha

T-complex protein 1 subunit gamma

T-complex protein 1 subunit eta, N-terminally processed

T-complex protein 1 subunit theta

T-complex protein 1 subunit beta

T-complex protein 1 subunit delta

T-complex protein 1 subunit epsilon

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