SMTL ID : 8sgr.1

human liver mitochondrial Isovaleryl-CoA dehydrogenase

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 26 residues within 4Å: Chain A: L.165, M.167, S.168, G.173, S.174, W.198, T.200, K.245, L.402, I.405, A.407, G.408, T.409, E.411, L.415 Chain B: R.312, F.315, I.319, F.322, M.325, Q.380, C.381, G.383, G.384, Y.387 Chain D: Q.323 19 PLIP interactions: 12 interactions with chain A, 6 interactions with chain B, 1 interactions with chain D Hydrophobic interactions: A:K.245, A:L.402, B:Y.387 Hydrogen bonds: A:L.165, A:M.167, A:S.168, A:S.168, A:S.174, A:S.174, A:T.200, A:A.407, A:G.408, A:T.409, B:C.381, B:G.384, D:Q.323 Salt bridges: B:R.312, B:R.312 pi-Stacking: B:F.322 FAD.2: 26 residues within 4Å: Chain A: R.312, F.315, I.319, F.322, M.325, Q.380, C.381, G.383, G.384, Y.387 Chain B: L.165, M.167, S.168, G.173, S.174, W.198, T.200, K.245, L.402, I.405, A.407, G.408, T.409, E.411, L.415 Chain C: Q.323 22 PLIP interactions: 15 interactions with chain B, 1 interactions with chain C, 6 interactions with chain A Hydrophobic interactions: B:K.245, B:L.402, A:Y.387 Hydrogen bonds: B:L.165, B:M.167, B:S.168, B:S.168, B:S.174, B:S.174, B:T.200, B:T.200, B:A.407, B:G.408, B:T.409, B:T.409, B:E.411, C:Q.323, A:C.381, A:G.384 Salt bridges: A:R.312, A:R.312 pi-Stacking: A:F.322 FAD.3: 26 residues within 4Å: Chain B: Q.323 Chain C: L.165, M.167, S.168, G.173, S.174, W.198, T.200, K.245, L.402, I.405, A.407, G.408, T.409, E.411, L.415 Chain D: R.312, F.315, I.319, F.322, M.325, Q.380, C.381, G.383, G.384, Y.387 22 PLIP interactions: 15 interactions with chain C, 1 interactions with chain B, 6 interactions with chain D Hydrophobic interactions: C:K.245, C:L.402, D:Y.387 Hydrogen bonds: C:L.165, C:M.167, C:S.168, C:S.168, C:S.174, C:S.174, C:T.200, C:T.200, C:A.407, C:G.408, C:T.409, C:T.409, C:E.411, B:Q.323, D:R.312, D:C.381, D:G.384 Salt bridges: D:R.312 pi-Stacking: D:F.322 FAD.4: 26 residues within 4Å: Chain A: Q.323 Chain C: R.312, F.315, I.319, F.322, M.325, Q.380, C.381, G.383, G.384, Y.387 Chain D: L.165, M.167, S.168, G.173, S.174, W.198, T.200, K.245, L.402, I.405, A.407, G.408, T.409, E.411, L.415 19 PLIP interactions: 6 interactions with chain C, 12 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: C:Y.387, D:K.245, D:L.402 Hydrogen bonds: C:R.312, C:C.381, C:G.384, D:L.165, D:M.167, D:S.168, D:S.168, D:S.174, D:S.174, D:T.200, D:A.407, D:G.408, D:T.409, A:Q.323 Salt bridges: C:R.312 pi-Stacking: C:F.322

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., High-Resolution Structural Proteomics of Mitochondria Using the 'Build and Retrieve' Methodology. Mol.Cell Proteomics (2023)

Release Date

2024-02-21

Peptides

Isovaleryl-CoA dehydrogenase, mitochondrial: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Isovaleryl-CoA dehydrogenase, mitochondrial