SMTL ID : 8sjd.1

Cryo-EM structure of the Hermes transposase bound to two right-ends of its DNA transposon.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

2 x DG- DC- DG- DT- DG- DA- DA: DNA (8-MER)(Non-covalent)

DG-DC-DG-DT-DG-DA-DA.1: 13 residues within 4Å: Chain C: D.248, R.249, H.268, N.272, T.317 Chain E: G.48, T.49, T.50, C.51, A.52, C.53, G.54, C.55 No protein-ligand interaction detected (PLIP) DG-DC-DG-DT-DG-DA-DA.2: 13 residues within 4Å: Chain D: D.248, R.249, G.250, H.268, N.272 Chain G: G.48, T.49, T.50, C.51, A.52, C.53, G.54, C.55 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lannes, L. et al., Zinc-finger BED domains drive the formation of the active Hermes transpososome by asymmetric DNA binding. Nat Commun (2023)

Release Date

2023-08-02

Peptides

Hermes transposase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
B

D
A

Hermes transposase

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