- Coordinates
- PDB Format
- Method
- ELECTRON CRYSTALLOGRAPHY 2.50 Å
- Oligo State
- homo-octamer
- Ligands
- 40 x HWP: [(E,2S,3R)-2-(hexadecanoylamino)-3-oxidanyl-octadec-4-enyl] 2-(trimethylazaniumyl)ethyl phosphate(Non-covalent)
- 32 x CLR: CHOLESTEROL(Non-covalent)
CLR.6: 8 residues within 4Å:- Chain A: V.90, L.94, F.198, H.201, W.202, W.205
- Ligands: HWP.3, CLR.7
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:V.90, A:L.94, A:F.198, A:F.198, A:W.202, A:W.205, A:W.205, A:W.205, A:W.205
- Hydrogen bonds: A:F.198
CLR.7: 9 residues within 4Å:- Chain A: V.91, I.193, F.198
- Ligands: HWP.1, HWP.2, HWP.3, HWP.4, CLR.6, CLR.9
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:V.91, A:I.193, A:F.198
CLR.8: 8 residues within 4Å:- Chain A: F.14, F.18, V.103, S.106
- Chain D: L.222
- Ligands: HWP.2, HWP.4, HWP.5
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain D- Hydrophobic interactions: A:F.14, A:F.18, A:F.18, D:L.222
CLR.9: 9 residues within 4Å:- Chain A: W.10, V.91, L.95
- Ligands: HWP.1, HWP.2, HWP.3, HWP.4, HWP.5, CLR.7
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:W.10, A:W.10, A:L.95
CLR.15: 8 residues within 4Å:- Chain B: V.90, L.94, F.198, H.201, W.202, W.205
- Ligands: HWP.12, CLR.16
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:V.90, B:L.94, B:F.198, B:F.198, B:W.202, B:W.205, B:W.205, B:W.205, B:W.205
- Hydrogen bonds: B:F.198
CLR.16: 9 residues within 4Å:- Chain B: V.91, I.193, F.198
- Ligands: HWP.10, HWP.11, HWP.12, HWP.13, CLR.15, CLR.18
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:V.91, B:I.193, B:F.198
CLR.17: 8 residues within 4Å:- Chain B: F.14, F.18, V.103, S.106
- Chain C: L.222
- Ligands: HWP.11, HWP.13, HWP.14
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain C- Hydrophobic interactions: B:F.14, B:F.18, B:F.18, C:L.222
CLR.18: 9 residues within 4Å:- Chain B: W.10, V.91, L.95
- Ligands: HWP.10, HWP.11, HWP.12, HWP.13, HWP.14, CLR.16
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:W.10, B:W.10, B:L.95
CLR.24: 8 residues within 4Å:- Chain C: V.90, L.94, F.198, H.201, W.202, W.205
- Ligands: HWP.21, CLR.25
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:V.90, C:L.94, C:F.198, C:F.198, C:W.202, C:W.205, C:W.205, C:W.205, C:W.205
- Hydrogen bonds: C:F.198
CLR.25: 9 residues within 4Å:- Chain C: V.91, I.193, F.198
- Ligands: HWP.19, HWP.20, HWP.21, HWP.22, CLR.24, CLR.27
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:V.91, C:I.193, C:F.198
CLR.26: 8 residues within 4Å:- Chain A: L.222
- Chain C: F.14, F.18, V.103, S.106
- Ligands: HWP.20, HWP.22, HWP.23
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain A- Hydrophobic interactions: C:F.14, C:F.18, C:F.18, A:L.222
CLR.27: 9 residues within 4Å:- Chain C: W.10, V.91, L.95
- Ligands: HWP.19, HWP.20, HWP.21, HWP.22, HWP.23, CLR.25
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:W.10, C:W.10, C:L.95
CLR.33: 8 residues within 4Å:- Chain D: V.90, L.94, F.198, H.201, W.202, W.205
- Ligands: HWP.30, CLR.34
10 PLIP interactions:10 interactions with chain D- Hydrophobic interactions: D:V.90, D:L.94, D:F.198, D:F.198, D:W.202, D:W.205, D:W.205, D:W.205, D:W.205
- Hydrogen bonds: D:F.198
CLR.34: 9 residues within 4Å:- Chain D: V.91, I.193, F.198
- Ligands: HWP.28, HWP.29, HWP.30, HWP.31, CLR.33, CLR.36
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:V.91, D:I.193, D:F.198
CLR.35: 8 residues within 4Å:- Chain B: L.222
- Chain D: F.14, F.18, V.103, S.106
- Ligands: HWP.29, HWP.31, HWP.32
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain B- Hydrophobic interactions: D:F.14, D:F.18, D:F.18, B:L.222
CLR.36: 9 residues within 4Å:- Chain D: W.10, V.91, L.95
- Ligands: HWP.28, HWP.29, HWP.30, HWP.31, HWP.32, CLR.34
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:W.10, D:W.10, D:L.95
CLR.42: 8 residues within 4Å:- Chain E: V.90, L.94, F.198, H.201, W.202, W.205
- Ligands: HWP.39, CLR.43
10 PLIP interactions:10 interactions with chain E- Hydrophobic interactions: E:V.90, E:L.94, E:F.198, E:F.198, E:W.202, E:W.205, E:W.205, E:W.205, E:W.205
- Hydrogen bonds: E:F.198
CLR.43: 9 residues within 4Å:- Chain E: V.91, I.193, F.198
- Ligands: HWP.37, HWP.38, HWP.39, HWP.40, CLR.42, CLR.45
3 PLIP interactions:3 interactions with chain E- Hydrophobic interactions: E:V.91, E:I.193, E:F.198
CLR.44: 8 residues within 4Å:- Chain E: F.14, F.18, V.103, S.106
- Chain H: L.222
- Ligands: HWP.38, HWP.40, HWP.41
4 PLIP interactions:1 interactions with chain H, 3 interactions with chain E- Hydrophobic interactions: H:L.222, E:F.14, E:F.18, E:F.18
CLR.45: 9 residues within 4Å:- Chain E: W.10, V.91, L.95
- Ligands: HWP.37, HWP.38, HWP.39, HWP.40, HWP.41, CLR.43
3 PLIP interactions:3 interactions with chain E- Hydrophobic interactions: E:W.10, E:W.10, E:L.95
CLR.51: 8 residues within 4Å:- Chain F: V.90, L.94, F.198, H.201, W.202, W.205
- Ligands: HWP.48, CLR.52
10 PLIP interactions:10 interactions with chain F- Hydrophobic interactions: F:V.90, F:L.94, F:F.198, F:F.198, F:W.202, F:W.205, F:W.205, F:W.205, F:W.205
- Hydrogen bonds: F:F.198
CLR.52: 9 residues within 4Å:- Chain F: V.91, I.193, F.198
- Ligands: HWP.46, HWP.47, HWP.48, HWP.49, CLR.51, CLR.54
3 PLIP interactions:3 interactions with chain F- Hydrophobic interactions: F:V.91, F:I.193, F:F.198
CLR.53: 8 residues within 4Å:- Chain F: F.14, F.18, V.103, S.106
- Chain G: L.222
- Ligands: HWP.47, HWP.49, HWP.50
4 PLIP interactions:1 interactions with chain G, 3 interactions with chain F- Hydrophobic interactions: G:L.222, F:F.14, F:F.18, F:F.18
CLR.54: 9 residues within 4Å:- Chain F: W.10, V.91, L.95
- Ligands: HWP.46, HWP.47, HWP.48, HWP.49, HWP.50, CLR.52
3 PLIP interactions:3 interactions with chain F- Hydrophobic interactions: F:W.10, F:W.10, F:L.95
CLR.60: 8 residues within 4Å:- Chain G: V.90, L.94, F.198, H.201, W.202, W.205
- Ligands: HWP.57, CLR.61
10 PLIP interactions:10 interactions with chain G- Hydrophobic interactions: G:V.90, G:L.94, G:F.198, G:F.198, G:W.202, G:W.205, G:W.205, G:W.205, G:W.205
- Hydrogen bonds: G:F.198
CLR.61: 9 residues within 4Å:- Chain G: V.91, I.193, F.198
- Ligands: HWP.55, HWP.56, HWP.57, HWP.58, CLR.60, CLR.63
3 PLIP interactions:3 interactions with chain G- Hydrophobic interactions: G:V.91, G:I.193, G:F.198
CLR.62: 8 residues within 4Å:- Chain E: L.222
- Chain G: F.14, F.18, V.103, S.106
- Ligands: HWP.56, HWP.58, HWP.59
4 PLIP interactions:1 interactions with chain E, 3 interactions with chain G- Hydrophobic interactions: E:L.222, G:F.14, G:F.18, G:F.18
CLR.63: 9 residues within 4Å:- Chain G: W.10, V.91, L.95
- Ligands: HWP.55, HWP.56, HWP.57, HWP.58, HWP.59, CLR.61
3 PLIP interactions:3 interactions with chain G- Hydrophobic interactions: G:W.10, G:W.10, G:L.95
CLR.69: 8 residues within 4Å:- Chain H: V.90, L.94, F.198, H.201, W.202, W.205
- Ligands: HWP.66, CLR.70
10 PLIP interactions:10 interactions with chain H- Hydrophobic interactions: H:V.90, H:L.94, H:F.198, H:F.198, H:W.202, H:W.205, H:W.205, H:W.205, H:W.205
- Hydrogen bonds: H:F.198
CLR.70: 9 residues within 4Å:- Chain H: V.91, I.193, F.198
- Ligands: HWP.64, HWP.65, HWP.66, HWP.67, CLR.69, CLR.72
3 PLIP interactions:3 interactions with chain H- Hydrophobic interactions: H:V.91, H:I.193, H:F.198
CLR.71: 8 residues within 4Å:- Chain F: L.222
- Chain H: F.14, F.18, V.103, S.106
- Ligands: HWP.65, HWP.67, HWP.68
4 PLIP interactions:3 interactions with chain H, 1 interactions with chain F- Hydrophobic interactions: H:F.14, H:F.18, H:F.18, F:L.222
CLR.72: 9 residues within 4Å:- Chain H: W.10, V.91, L.95
- Ligands: HWP.64, HWP.65, HWP.66, HWP.67, HWP.68, CLR.70
3 PLIP interactions:3 interactions with chain H- Hydrophobic interactions: H:W.10, H:W.10, H:L.95
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chiu, P.-L. et al., Structure of aquaporin-0 arrays in sphingomyelin/cholesterol membranes and implications for lipid rafts. To Be Published
- Release Date
- 2024-04-24
- Peptides
- Lens fiber major intrinsic protein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON CRYSTALLOGRAPHY 2.50 Å
- Oligo State
- homo-octamer
- Ligands
- 40 x HWP: [(E,2S,3R)-2-(hexadecanoylamino)-3-oxidanyl-octadec-4-enyl] 2-(trimethylazaniumyl)ethyl phosphate(Non-covalent)
- 32 x CLR: CHOLESTEROL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chiu, P.-L. et al., Structure of aquaporin-0 arrays in sphingomyelin/cholesterol membranes and implications for lipid rafts. To Be Published
- Release Date
- 2024-04-24
- Peptides
- Lens fiber major intrinsic protein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A - Membrane
-
We predict this structure to be a membrane protein.