SMTL ID : 8skb.1 (1 other biounit)

Crystal Structure of GDP-mannose 3,5 epimerase de Myrciaria dubia in complex with NAD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.58 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 27 residues within 4Å: Chain A: G.67, G.69, G.70, F.71, I.72, D.91, W.92, K.93, V.110, D.111, L.112, R.113, L.131, A.132, A.133, D.134, M.135, I.155, A.174, S.175, S.176, Y.206, K.210, F.233, H.234, N.235, I.236 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.233 Hydrogen bonds: A:G.67, A:F.71, A:I.72, A:W.92, A:D.111, A:L.112, A:R.113, A:L.131, A:A.133, A:Y.206, A:K.210, A:I.236 Water bridges: A:I.236 pi-Stacking: A:W.92, A:W.92, A:F.233 NAD.2: 25 residues within 4Å: Chain B: G.67, G.69, G.70, F.71, I.72, D.91, W.92, K.93, V.110, D.111, L.112, R.113, L.131, A.132, A.133, D.134, I.155, A.174, S.175, S.176, Y.206, K.210, F.233, H.234, I.236 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:F.233 Hydrogen bonds: B:G.69, B:F.71, B:I.72, B:W.92, B:D.111, B:D.111, B:L.112, B:R.113, B:L.131, B:A.133, B:Y.206, B:K.210, B:I.236 pi-Stacking: B:W.92, B:W.92, B:F.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vargas, J.A. et al., Structural insights into the Smirnoff-Wheeler pathway for vitamin C production in the Amazon fruit Camu-Camu. J.Exp.Bot. (2024)

Release Date

2024-03-13

Peptides

GDP-mannose 3,5 epimerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GDP-mannose 3,5 epimerase

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