SMTL ID : 8skn.1 (1 other biounit)

Crystal structure of compound 3-bound human Dynamin-1-like protein GTPase-BSE fusion

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

monomer

Ligands

1 x 6I9: N-[4-(azetidin-1-yl)-2-(4-methylphenyl)quinolin-6-yl]-2-methylpropanamide(Non-covalent)

6I9.1: 6 residues within 4Å: Chain A: I.42, R.327, V.330, L.331, Q.334, Y.335 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.42, A:R.327, A:V.330, A:L.331, A:Y.335 Hydrogen bonds: A:R.327, A:Q.334

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: V.34, F.35, N.36, G.39, D.361, M.362, A.365 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.36 EDO.3: 2 residues within 4Å: Chain A: D.41, S.195 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.41, A:S.195, A:S.195 EDO.4: 6 residues within 4Å: Chain A: S.59, S.60, E.63, L.71, R.73, I.272 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.60, A:L.71 Water bridges: A:S.59, A:R.267 EDO.5: 9 residues within 4Å: Chain A: S.60, S.64, V.265, N.266, R.267, V.278, S.281, I.282, T.302 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.265, A:R.267, A:T.302 Water bridges: A:S.60, A:R.267 EDO.6: 4 residues within 4Å: Chain A: N.329, A.332, Q.367, S.370 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.329 Water bridges: A:Q.367 EDO.7: 2 residues within 4Å: Chain A: N.329, V.330 No protein-ligand interaction detected (PLIP) EDO.8: 4 residues within 4Å: Chain A: P.26, N.29, V.88, K.153 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.29, A:K.153, A:K.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Furuya, T. et al., Discovery of Potent Allosteric DRP1 Inhibitors by Disrupting Protein-Protein Interaction with MiD49. Acs Med.Chem.Lett. (2023)

Release Date

2023-08-30

Peptides

Dynamin-1-like protein GTPase-BSE fusion: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dynamin-1-like protein GTPase-BSE fusion

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