SMTL ID : 8sko.1 (1 other biounit)

X-ray structure of the NDM-4 beta-lactamase from Klebsiella pneumonia with L-Captopril bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.80, H.82, H.149, C.168 Ligands: ZN.2, X8Z.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.80, A:H.82, A:H.149 ZN.2: 5 residues within 4Å: Chain A: D.84, C.168, H.210 Ligands: ZN.1, X8Z.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.84, A:C.168, A:H.210

1 x X8Z: L-CAPTOPRIL(Non-covalent)

X8Z.3: 13 residues within 4Å: Chain A: M.27, F.30, V.33, W.53, H.82, D.84, H.149, C.168, G.179, N.180, H.210 Ligands: ZN.1, ZN.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.33, A:W.53 Hydrogen bonds: A:N.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thoden, J.B. et al., Characterization of a novel inhibitor for the New Delhi metallo-beta-lactamase-4: Implications for drug design and combating bacterial drug resistance. J.Biol.Chem. (2023)

Release Date

2023-08-23

Peptides

Metallo-beta-lactamase type 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Metallo-beta-lactamase type 2

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