SMTL ID : 8sky.1

Crystal structure of YisK from Bacillus subtilis in complex with oxalate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x OXL: OXALATE ION(Non-covalent)

OXL.1: 12 residues within 4Å: Chain A: I.100, G.101, K.102, H.107, F.124, E.151, E.153, D.182, K.199, G.268, T.269 Ligands: MN.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.102, A:T.269 Water bridges: A:N.103, A:N.103, A:Q.189, A:G.268 Salt bridges: A:H.107, A:K.199 OXL.3: 12 residues within 4Å: Chain B: I.100, G.101, K.102, H.107, F.124, E.151, E.153, D.182, K.199, G.268, T.269 Ligands: MN.4 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:K.102, B:T.269 Water bridges: B:R.186, B:R.186, B:K.199 Salt bridges: B:H.107, B:K.199, B:K.199

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 5 residues within 4Å: Chain A: E.151, E.153, D.182, K.199 Ligands: OXL.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.151, A:E.153, A:D.182, H2O.1 MN.4: 5 residues within 4Å: Chain B: E.151, E.153, D.182, K.199 Ligands: OXL.3 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.151, B:E.153, B:D.182, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, T. et al., Bacillus subtilis YisK possesses oxaloacetate decarboxylase activity and exhibits Mbl-dependent localization. J.Bacteriol. (2024)

Release Date

2023-11-01

Peptides

Fumarylacetoacetate hydrolase family protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fumarylacetoacetate hydrolase family protein

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