SMTL ID : 8slh.1

Crystal Structure of Glycine tRNA ligase from Mycobacterium thermoresistibile (AMP bound, hexagonal form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.05 Å

Oligo State

homo-dimer

Ligands

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 14 residues within 4Å: Chain A: F.226, R.227, T.228, F.231, Q.233, E.235, E.303, L.304, E.305, G.306, A.345, A.346, G.347, R.350 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:T.228, A:T.228, A:Q.233, A:E.303, A:L.304, A:G.306, A:A.345 pi-Stacking: A:F.231, A:F.231 pi-Cation interactions: A:R.350, A:R.350 AMP.3: 14 residues within 4Å: Chain B: F.226, R.227, T.228, F.231, Q.233, E.235, E.303, L.304, E.305, G.306, A.345, A.346, G.347, R.350 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:T.228, B:T.228, B:Q.233, B:E.235, B:L.304, B:G.306, B:A.345 pi-Stacking: B:F.231, B:F.231 pi-Cation interactions: B:R.350, B:R.350

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: V.75, R.78, V.81 Chain B: N.416 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:V.75, A:R.78 MG.4: 4 residues within 4Å: Chain A: N.416 Chain B: V.75, R.78, V.81 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:V.75, B:R.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lovell, S. et al., Crystal Structure of Glycine tRNA ligase from Mycobacterium thermoresistibile (AMP bound, hexagonal form). To be published

Release Date

2023-05-03

Peptides

Glycine--tRNA ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycine--tRNA ligase

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