SMTL ID : 8slm.1

Crystal structure of Deinococcus geothermalis PprI

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: R.87, S.166, A.167, S.168, V.186, R.209, R.269 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.167, A:S.168, A:S.168 Salt bridges: A:R.87, A:R.209, A:R.269 SO4.3: 7 residues within 4Å: Chain B: R.87, S.166, A.167, S.168, V.186, R.209, R.269 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:A.167, B:S.168, B:S.168 Salt bridges: B:R.87, B:R.209, B:R.269

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 3 residues within 4Å: Chain A: H.94, H.98, E.125 No protein-ligand interaction detected (PLIP) MN.4: 3 residues within 4Å: Chain B: H.94, H.98, E.125 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, H. et al., The Deinococcus protease PprI senses DNA damage by directly interacting with single-stranded DNA. Nat Commun (2024)

Release Date

2024-03-13

Peptides

Zn dependent hydrolase fused to HTH domain, IrrE ortholog: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Zn dependent hydrolase fused to HTH domain, IrrE ortholog

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