SMTL ID : 8sm1.1

CRYSTAL STRUCTURE OF HUMAN ANTIBODY 769A9 IN COMPLEX WITH EPSTEIN-BARR VIRUS MAJOR GLYCOPROTEIN GP350

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.29 Å

Oligo State

hetero-1-1-1-mer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.166, Y.297, C.298 No protein-ligand interaction detected (PLIP) NAG.2: 5 residues within 4Å: Chain A: L.6, D.45, N.47, D.64, F.82 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.6 Hydrogen bonds: A:D.45, A:D.45 NAG.3: 1 residues within 4Å: Chain A: N.229 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.229 NAG.4: 3 residues within 4Å: Chain A: N.277, V.304, D.307 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.304 NAG.5: 2 residues within 4Å: Chain A: T.11, N.411 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.411 NAG.6: 2 residues within 4Å: Chain A: N.386, T.388 No protein-ligand interaction detected (PLIP) NAG.7: 4 residues within 4Å: Chain A: A.353, W.354, P.355, N.356 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.356 NAG.8: 3 residues within 4Å: Chain A: Q.9, P.344, N.345 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.9

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, W.-H. et al., Structural Basis For Receptor Engagement And Virus Neutralization Through Epstein-Barr Virus Gp350. To Be Published

Release Date

2024-05-01

Peptides

Envelope glycoprotein gp350: A
769A9 Fab heavy chain: B
769A9 Fab light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
L

Envelope glycoprotein gp350

769A9 Fab heavy chain

769A9 Fab light chain

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