SMTL ID : 8smc.1

Cryo-EM structure of LRRK2 bound with type-I inhibitor DNL201

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 11 residues within 4Å: Chain A: T.17, G.18, G.20, K.21, T.22, T.23, Q.39, A.41, T.42, H.127, A.164 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.17, A:G.18, A:G.20, A:T.22, A:T.22, A:Q.39, A:T.42, A:H.127

1 x TVT: 2-methyl-2-(3-methyl-4-{[4-(methylamino)-5-(trifluoromethyl)pyrimidin-2-yl]amino}-1H-pyrazol-1-yl)propanenitrile(Non-covalent)

TVT.2: 15 residues within 4Å: Chain A: L.559, V.567, R.569, A.578, I.607, M.621, E.622, L.623, A.624, S.625, G.627, S.628, R.631, L.675, A.690 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.559, A:A.578, A:L.675 Hydrogen bonds: A:A.624, A:A.624 Halogen bonds: A:A.578

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, H. et al., Rab29-dependent asymmetrical activation of leucine-rich repeat kinase 2. Science (2023)

Release Date

2024-01-03

Peptides

non-specific serine/threonine protein kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

non-specific serine/threonine protein kinase

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