SMTL ID : 8smk.1

hPAD4 bound to Activating Fab hA362

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-mer

Ligands

8 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.385, F.439, L.442, E.443 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.385, A:F.439, A:L.442, A:E.443 CA.2: 7 residues within 4Å: Chain A: N.185, D.187, D.189, D.197, D.208, D.211 Ligands: CA.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.187, A:D.189, A:D.197, A:D.208 CA.3: 6 residues within 4Å: Chain A: D.187, D.189, D.211, P.419, D.420 Ligands: CA.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.187, A:D.189, A:D.211, A:P.419, A:D.420 CA.4: 3 residues within 4Å: Chain A: D.197, D.200, E.202 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.197, A:D.200, A:E.202 CA.5: 4 residues within 4Å: Chain D: E.385, F.439, L.442, E.443 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.385, D:F.439, D:L.442, D:E.443 CA.6: 7 residues within 4Å: Chain D: N.185, D.187, D.189, D.197, D.208, D.211 Ligands: CA.7 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.187, D:D.189, D:D.197, D:D.208 CA.7: 6 residues within 4Å: Chain D: D.187, D.189, D.211, P.419, D.420 Ligands: CA.6 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.187, D:D.189, D:D.211, D:P.419, D:D.420 CA.8: 3 residues within 4Å: Chain D: D.197, D.200, E.202 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.197, D:D.200, D:E.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, X. et al., Antibody discovery identifies regulatory mechanisms of protein arginine deiminase 4. Nat.Chem.Biol. (2024)

Release Date

2024-03-06

Peptides

Protein-arginine deiminase type-4: AD
Activating Fab 362 heavy chain: BE
Activating Fab 362 light chain: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

E
E

C
C

F
F

Protein-arginine deiminase type-4

Activating Fab 362 heavy chain

Activating Fab 362 light chain

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