SMTL ID : 8so8.1

Crystal structure of an N-terminally truncated variant of Escherichia coli RapA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

monomer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: V.78, G.79, L.80, G.81, K.82, T.83 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.79, A:L.80, A:G.81, A:K.82, A:T.83 Water bridges: A:I.84, A:I.84 Salt bridges: A:K.82 SO4.2: 4 residues within 4Å: Chain A: Y.134, Q.138, S.161, R.164 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.134, A:Y.134, A:Q.138, A:S.161 Salt bridges: A:R.164 SO4.3: 5 residues within 4Å: Chain A: Y.29, K.33, R.741, E.756, F.757 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.29, A:Y.29, A:F.757 Salt bridges: A:K.33, A:R.741 SO4.4: 6 residues within 4Å: Chain A: E.108, D.131, S.154, D.156, F.157, R.160 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.131, A:S.154, A:F.157 Water bridges: A:R.160 Salt bridges: A:R.160 SO4.5: 4 residues within 4Å: Chain A: Y.134, Q.138, Q.163, H.167 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.134, A:Q.138, A:Q.163 Salt bridges: A:H.167 SO4.6: 3 residues within 4Å: Chain A: H.112, S.438, I.439 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.439 Water bridges: A:R.442 Salt bridges: A:H.112 SO4.7: 5 residues within 4Å: Chain A: F.433, R.442, G.468, R.469, R.495 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.469 Water bridges: A:R.442, A:R.442 Salt bridges: A:R.442, A:R.469, A:R.495 SO4.8: 6 residues within 4Å: Chain A: E.77, V.78, A.213, T.214, P.215, R.318 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.78, A:T.214 Water bridges: A:R.318, A:R.318 Salt bridges: A:K.82, A:R.318 SO4.9: 2 residues within 4Å: Chain A: K.411, A.413 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.413 Salt bridges: A:K.411 SO4.10: 3 residues within 4Å: Chain A: S.161, K.162, Q.163 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.162, A:Q.163

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.11: 2 residues within 4Å: Chain A: P.726, K.727 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain A: P.107, E.108, T.109 Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain A: P.107, D.179 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain A: H.533, C.535 Ligand excluded by PLIP CL.15: 4 residues within 4Å: Chain A: D.23, A.26, R.30, N.761 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shaw, G.X. et al., Crystal structure of an N-terminally truncated variant of Escherichia coli RapA. To be published

Release Date

2024-07-03

Peptides

RNA polymerase-associated protein RapA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA polymerase-associated protein RapA

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