- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- homo-octamer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x DND: NICOTINIC ACID ADENINE DINUCLEOTIDE(Non-covalent)
DND.2: 20 residues within 4Å:- Chain A: A.124, G.125, T.126, A.127, D.128, D.151, A.155, A.177, G.178, M.179, V.202, Y.204
- Chain G: V.51, I.52, Y.53, T.79, F.234
- Chain H: C.221, S.223
- Ligands: MG.1
11 PLIP interactions:6 interactions with chain A, 5 interactions with chain G- Hydrogen bonds: A:G.125, A:T.126, A:A.127, A:D.128, A:G.178, A:Y.204, G:V.51, G:Y.53, G:Y.53, G:T.79
- pi-Stacking: G:Y.53
DND.4: 20 residues within 4Å:- Chain C: A.124, G.125, T.126, A.127, D.128, D.151, A.155, A.177, G.178, M.179, V.202, Y.204
- Chain E: V.51, I.52, Y.53, T.79, F.234
- Chain F: C.221, S.223
- Ligands: MG.3
11 PLIP interactions:6 interactions with chain C, 5 interactions with chain E- Hydrogen bonds: C:G.125, C:T.126, C:A.127, C:D.128, C:G.178, C:Y.204, E:V.51, E:Y.53, E:Y.53, E:T.79
- pi-Stacking: E:Y.53
DND.6: 20 residues within 4Å:- Chain A: V.51, I.52, Y.53, T.79, F.234
- Chain B: C.221, S.223
- Chain E: A.124, G.125, T.126, A.127, D.128, D.151, A.155, A.177, G.178, M.179, V.202, Y.204
- Ligands: MG.5
11 PLIP interactions:6 interactions with chain E, 5 interactions with chain A- Hydrogen bonds: E:G.125, E:T.126, E:A.127, E:D.128, E:G.178, E:Y.204, A:V.51, A:Y.53, A:Y.53, A:T.79
- pi-Stacking: A:Y.53
DND.8: 20 residues within 4Å:- Chain C: V.51, I.52, Y.53, T.79, F.234
- Chain D: C.221, S.223
- Chain G: A.124, G.125, T.126, A.127, D.128, D.151, A.155, A.177, G.178, M.179, V.202, Y.204
- Ligands: MG.7
11 PLIP interactions:5 interactions with chain C, 6 interactions with chain G- Hydrogen bonds: C:V.51, C:Y.53, C:Y.53, C:T.79, G:G.125, G:T.126, G:A.127, G:D.128, G:G.178, G:Y.204
- pi-Stacking: C:Y.53
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chatterjee, S. et al., Structure of the LarB-Substrate Complex and Identification of a Reaction Intermediate during Nickel-Pincer Nucleotide Cofactor Biosynthesis. Biochemistry (2023)
- Release Date
- 2023-12-27
- Peptides
- Pyridinium-3,5-biscarboxylic acid mononucleotide synthase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
ED
FE
EF
FG
EH
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- homo-octamer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x DND: NICOTINIC ACID ADENINE DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chatterjee, S. et al., Structure of the LarB-Substrate Complex and Identification of a Reaction Intermediate during Nickel-Pincer Nucleotide Cofactor Biosynthesis. Biochemistry (2023)
- Release Date
- 2023-12-27
- Peptides
- Pyridinium-3,5-biscarboxylic acid mononucleotide synthase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
ED
FE
EF
FG
EH
F