SMTL ID : 8sp4.1

Crystal structure of N-terminally truncated Escherichia coli RapA in complex with ATP-gamma-S

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.1: 19 residues within 4Å: Chain A: T.51, S.52, I.54, Q.57, E.77, V.78, G.79, L.80, G.81, K.82, T.83, I.84, Q.113, E.117, R.121, D.179, E.180, G.468, R.498 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:S.52, A:S.52, A:Q.57, A:E.77, A:G.79, A:L.80, A:G.81, A:K.82, A:T.83, A:T.83, A:T.83, A:I.84, A:Q.113, A:E.117, A:R.121, A:D.179, A:R.498 Water bridges: A:S.52, A:I.54, A:K.82, A:D.179, A:S.466, A:R.498 Salt bridges: A:K.82

7 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: P.107, E.108, S.154, L.155, D.156 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: F.433, S.466, E.467, R.469, R.495 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: L.367, D.481, L.482, Q.517 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: G.219, M.220, E.221, S.222 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain A: I.347, M.366, T.515, A.516, P.556 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: R.21, M.22, A.766 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain A: H.400, R.401, S.402, Q.403 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shaw, G.X. et al., Crystal structure of N-terminally truncated Escherichia coli RapA in complex with ATP-gamma-S. To be published

Release Date

2024-07-03

Peptides

RNA polymerase-associated protein RapA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA polymerase-associated protein RapA

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