SMTL ID : 8spe.1 (8 other biounits)

Crystal structure of Bax core domain BH3-groove dimer - tetrameric fraction P31

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain B: D.37, D.39 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.37, B:D.37 ZN.2: 2 residues within 4Å: Chain C: E.22 Chain D: E.22 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D Metal complexes: C:E.22, D:E.22 ZN.3: 3 residues within 4Å: Chain C: G.1, P.2, D.6 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:G.1, C:D.6, C:D.6, H2O.1 ZN.5: 2 residues within 4Å: Chain D: D.37, D.39 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.37, D:D.39, D:D.39

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain C: R.18, D.21, E.22 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.21, C:D.21 EDO.6: 4 residues within 4Å: Chain B: V.74 Chain C: N.59, W.60 Chain D: D.24 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miller, M.S. et al., Sequence differences between BAX and BAK core domains manifest as differences in their interactions with lipids. Febs J. (2023)

Release Date

2023-12-27

Peptides

Apoptosis regulator BAX: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Apoptosis regulator BAX

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