SMTL ID : 8spg.1

Crystal structure of N-terminally truncated Escherichia coli RapA in complex with MgADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain A: T.51, S.52, I.54, Q.57, E.77, V.78, G.79, L.80, G.81, K.82, T.83, I.84, E.117, R.121, G.468, N.470, R.498 Ligands: MG.2 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:S.52, A:S.52, A:Q.57, A:G.79, A:L.80, A:G.81, A:K.82, A:T.83, A:T.83, A:T.83, A:I.84, A:E.117, A:R.121, A:N.470, A:R.498 Water bridges: A:S.52, A:S.52, A:I.54, A:K.82, A:D.179, A:E.180, A:E.180 Salt bridges: A:K.82

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.83, D.179 Ligands: ADP.1 No protein-ligand interaction detected (PLIP)

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: N.470, F.471, R.495, L.496, R.498 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: S.44, R.66, Q.92 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: P.338, P.340, P.388 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: L.94, A.99, E.100 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shaw, G.X. et al., Crystal structure of N-terminally truncated Escherichia coli RapA in complex with MgADP. To be published

Release Date

2024-07-03

Peptides

RNA polymerase-associated protein RapA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA polymerase-associated protein RapA

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