SMTL ID : 8spm.1

Crystal structure of NikA in complex Ni-AMA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x II1: Aspergillomarasmine A(Non-covalent)

II1.1: 11 residues within 4Å: Chain A: Y.21, T.22, M.26, R.96, W.99, R.136, R.385, W.397, S.414, H.415 Ligands: NI.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.397 Hydrogen bonds: A:T.22, A:S.414 Water bridges: A:R.96, A:R.96, A:R.385, A:R.385 Salt bridges: A:R.96, A:R.96, A:R.136, A:R.136, A:R.385, A:H.415

1 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 2 residues within 4Å: Chain A: H.415 Ligands: II1.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.415

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sychantha, D. et al., Targeting bacterial nickel transport with aspergillomarasmine A suppresses virulence-associated Ni-dependent enzymes. Nat Commun (2024)

Release Date

2024-04-10

Peptides

Nickel ABC transporter, nickel/metallophore periplasmic binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nickel ABC transporter, nickel/metallophore periplasmic binding protein