SMTL ID : 8sr6.1

Crystal structure of legAS4 from Legionella pneumophila subsp. pneumophila with histone H3 (3-17)peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 14 residues within 4Å: Chain A: L.44, G.49, R.50, S.90, Y.91, R.110, Y.111, I.112, N.113, F.114, Y.152, Y.163, Y.164, L.166 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:R.50, A:R.50, A:Y.91, A:Y.91, A:F.114, A:Y.163, A:Y.164, A:Y.164 Water bridges: A:N.19, A:S.90, A:Y.163, A:L.166 pi-Stacking: A:Y.163, A:Y.163

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: G.145, G.169, G.171, W.172, L.173, F.178 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.145, A:W.172, A:L.173 Water bridges: A:G.169, A:G.171, A:G.171

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 5 residues within 4Å: Chain A: R.161, Y.162, Y.164, H.285, R.326 No protein-ligand interaction detected (PLIP)

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: P.394, D.395, G.439, L.440, H.441 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.394 EDO.5: 8 residues within 4Å: Chain A: F.114, D.116, A.159, S.160, Y.163, Y.164, F.165, H.324 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.164, A:H.324 EDO.6: 6 residues within 4Å: Chain A: N.120, N.141, I.142, K.143, Q.146, P.168 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.120, A:K.143, A:Q.146 EDO.7: 4 residues within 4Å: Chain A: V.71, R.98, K.131, V.133 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.98, A:R.98, A:K.131 EDO.8: 8 residues within 4Å: Chain A: S.292, V.323, H.324, D.325, K.329, T.330, F.331, N.334 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.325, A:N.334 EDO.9: 5 residues within 4Å: Chain A: M.12, L.13, H.16, I.17, D.18 No protein-ligand interaction detected (PLIP) EDO.10: 3 residues within 4Å: Chain A: R.213, Y.219 Ligands: EDO.11 No protein-ligand interaction detected (PLIP) EDO.11: 5 residues within 4Å: Chain A: E.189, Q.190, P.192, R.213 Ligands: EDO.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.189, A:Q.190 EDO.12: 2 residues within 4Å: Chain A: G.169, D.233 No protein-ligand interaction detected (PLIP) EDO.13: 6 residues within 4Å: Chain A: N.19, M.20, Y.91, A.103, R.110, Y.111 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.103, A:R.110, A:R.110 Water bridges: A:N.19

1 x K: POTASSIUM ION(Non-functional Binders)

K.14: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, C. et al., Histone methyltransferase activity of the secreted Legionella pneumophila SET-domain effector RomA/LegAS4 depends on its ankyrin domain. To Be Published

Release Date

2024-03-13

Peptides

Eukaryotic huntingtin interacting protein B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Eukaryotic huntingtin interacting protein B

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