- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 8 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)
- 16 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 5 residues within 4Å:- Chain A: E.850, Q.853, N.869, D.872, R.913
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.850, A:D.872
MG.3: 5 residues within 4Å:- Chain A: G.1370, E.1390, D.1460
- Ligands: MG.4, APR.7
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:G.1370, A:E.1390, A:E.1390
MG.4: 6 residues within 4Å:- Chain A: E.1386, E.1390, D.1460
- Ligands: MG.3, MG.5, APR.7
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:E.1386, A:E.1390, A:D.1460
MG.5: 4 residues within 4Å:- Chain A: E.1386, D.1460
- Ligands: MG.4, APR.7
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.1386, A:E.1386
MG.12: 5 residues within 4Å:- Chain B: E.850, Q.853, N.869, D.872, R.913
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:E.850, B:D.872
MG.13: 5 residues within 4Å:- Chain B: G.1370, E.1390, D.1460
- Ligands: MG.14, APR.16
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:G.1370, B:E.1390, B:E.1390
MG.14: 6 residues within 4Å:- Chain B: E.1386, E.1390, D.1460
- Ligands: MG.13, MG.15, APR.16
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:E.1386, B:E.1390, B:D.1460
MG.15: 4 residues within 4Å:- Chain B: E.1386, D.1460
- Ligands: MG.14, APR.16
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:E.1386, B:E.1386
MG.20: 5 residues within 4Å:- Chain C: E.850, Q.853, N.869, D.872, R.913
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:E.850, C:D.872
MG.21: 5 residues within 4Å:- Chain C: G.1370, E.1390, D.1460
- Ligands: MG.22, APR.25
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:G.1370, C:E.1390, C:E.1390
MG.22: 6 residues within 4Å:- Chain C: E.1386, E.1390, D.1460
- Ligands: MG.21, MG.23, APR.25
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:E.1386, C:E.1390, C:D.1460
MG.23: 4 residues within 4Å:- Chain C: E.1386, D.1460
- Ligands: MG.22, APR.25
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:E.1386, C:E.1386
MG.31: 5 residues within 4Å:- Chain D: E.850, Q.853, N.869, D.872, R.913
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:E.850, D:D.872
MG.32: 5 residues within 4Å:- Chain D: G.1370, E.1390, D.1460
- Ligands: MG.33, APR.36
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:G.1370, D:E.1390, D:E.1390
MG.33: 6 residues within 4Å:- Chain D: E.1386, E.1390, D.1460
- Ligands: MG.32, MG.34, APR.36
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:E.1386, D:E.1390, D:D.1460
MG.34: 4 residues within 4Å:- Chain D: E.1386, D.1460
- Ligands: MG.33, APR.36
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:E.1386, D:E.1386
- 12 x CLR: CHOLESTEROL(Non-covalent)
CLR.6: 7 residues within 4Å:- Chain A: L.878, V.898, I.902, F.905
- Chain D: E.1009, M.1013
- Ligands: CLR.29
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:L.878, A:V.898, A:I.902, A:F.905, A:F.905, A:F.905, A:F.905
CLR.8: 14 residues within 4Å:- Chain A: F.1003, R.1012, P.1015, F.1016, A.1019
- Chain B: V.942, L.945, L.946, L.949, I.972, L.975, F.976, Y.979
- Ligands: CLR.9
14 PLIP interactions:7 interactions with chain A, 7 interactions with chain B- Hydrophobic interactions: A:F.1003, A:P.1015, A:F.1016, A:F.1016, A:A.1019, B:L.945, B:L.949, B:L.975, B:F.976, B:Y.979, B:Y.979, B:Y.979
- Hydrogen bonds: A:R.1012, A:R.1012
CLR.9: 6 residues within 4Å:- Chain A: E.1009, R.1012, M.1013, F.1016
- Ligands: CLR.8, CLR.10
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:F.1016, A:F.1016, A:F.1016
- Hydrogen bonds: A:E.1009
CLR.10: 7 residues within 4Å:- Chain A: E.1009, M.1013
- Chain B: L.878, V.898, I.902, F.905
- Ligands: CLR.9
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:L.878, B:V.898, B:I.902, B:F.905, B:F.905, B:F.905, B:F.905
CLR.17: 14 residues within 4Å:- Chain B: F.1003, R.1012, P.1015, F.1016, A.1019
- Chain C: V.942, L.945, L.946, L.949, I.972, L.975, F.976, Y.979
- Ligands: CLR.18
14 PLIP interactions:7 interactions with chain B, 7 interactions with chain C- Hydrophobic interactions: B:F.1003, B:P.1015, B:F.1016, B:F.1016, B:A.1019, C:L.945, C:L.949, C:L.975, C:F.976, C:Y.979, C:Y.979, C:Y.979
- Hydrogen bonds: B:R.1012, B:R.1012
CLR.18: 6 residues within 4Å:- Chain B: E.1009, R.1012, M.1013, F.1016
- Ligands: CLR.17, CLR.24
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:F.1016, B:F.1016, B:F.1016
- Hydrogen bonds: B:E.1009
CLR.24: 7 residues within 4Å:- Chain B: E.1009, M.1013
- Chain C: L.878, V.898, I.902, F.905
- Ligands: CLR.18
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:L.878, C:V.898, C:I.902, C:F.905, C:F.905, C:F.905, C:F.905
CLR.26: 14 residues within 4Å:- Chain C: F.1003, R.1012, P.1015, F.1016, A.1019
- Chain D: V.942, L.945, L.946, L.949, I.972, L.975, F.976, Y.979
- Ligands: CLR.27
14 PLIP interactions:7 interactions with chain D, 7 interactions with chain C- Hydrophobic interactions: D:L.945, D:L.949, D:L.975, D:F.976, D:Y.979, D:Y.979, D:Y.979, C:F.1003, C:P.1015, C:F.1016, C:F.1016, C:A.1019
- Hydrogen bonds: C:R.1012, C:R.1012
CLR.27: 6 residues within 4Å:- Chain C: E.1009, R.1012, M.1013, F.1016
- Ligands: CLR.26, CLR.35
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:F.1016, C:F.1016, C:F.1016
- Hydrogen bonds: C:E.1009
CLR.28: 14 residues within 4Å:- Chain A: V.942, L.945, L.946, L.949, I.972, L.975, F.976, Y.979
- Chain D: F.1003, R.1012, P.1015, F.1016, A.1019
- Ligands: CLR.29
14 PLIP interactions:7 interactions with chain D, 7 interactions with chain A- Hydrophobic interactions: D:F.1003, D:P.1015, D:F.1016, D:F.1016, D:A.1019, A:L.945, A:L.949, A:L.975, A:F.976, A:Y.979, A:Y.979, A:Y.979
- Hydrogen bonds: D:R.1012, D:R.1012
CLR.29: 6 residues within 4Å:- Chain D: E.1009, R.1012, M.1013, F.1016
- Ligands: CLR.6, CLR.28
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:F.1016, D:F.1016, D:F.1016
- Hydrogen bonds: D:E.1009
CLR.35: 7 residues within 4Å:- Chain C: E.1009, M.1013
- Chain D: L.878, V.898, I.902, F.905
- Ligands: CLR.27
7 PLIP interactions:7 interactions with chain D- Hydrophobic interactions: D:L.878, D:V.898, D:I.902, D:F.905, D:F.905, D:F.905, D:F.905
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Huang, Y. et al., Coupling enzymatic activity and gating in an ancient TRPM chanzyme and its molecular evolution. To Be Published
- Release Date
- 2024-05-15
- Peptides
- TRPM2 chanzyme: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 8 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)
- 16 x MG: MAGNESIUM ION(Non-covalent)
- 12 x CLR: CHOLESTEROL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Huang, Y. et al., Coupling enzymatic activity and gating in an ancient TRPM chanzyme and its molecular evolution. To Be Published
- Release Date
- 2024-05-15
- Peptides
- TRPM2 chanzyme: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.