SMTL ID : 8ssn.2 (1 other biounit)

Abl kinase in complex with SKI and asciminib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.86 Å

Oligo State

monomer

Ligands

1 x AY7: asciminib(Non-covalent)

AY7.1: 18 residues within 4Å: Chain A: R.270, A.275, L.278, L.279, A.282, L.367, I.370, A.371, T.372, P.399, E.400, G.401, C.402, P.403, V.406, F.431, I.440, V.444 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.278, A:L.278, A:A.371, A:I.440 Hydrogen bonds: A:A.371, A:E.400, A:G.401

1 x SKI: 6,7-dimethoxy-N-(4-phenoxyphenyl)quinazolin-4-amine(Non-covalent)

SKI.2: 15 residues within 4Å: Chain A: A.207, K.209, V.237, I.251, T.253, E.254, F.255, M.256, T.257, Y.258, G.259, N.260, L.308, D.319, F.320 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:K.209, A:V.237, A:F.255, A:F.320 Hydrogen bonds: A:T.253, A:M.256

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: G.23, E.24, K.25 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.25 Salt bridges: A:K.25

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 2 residues within 4Å: Chain A: R.72, R.90 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.90, A:R.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, C. et al., A biophysical framework for double-drugging kinases. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-09-06

Peptides

Tyrosine-protein kinase ABL1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Tyrosine-protein kinase ABL1

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