SMTL ID : 8st6.1

Hsa Siglec + Unique domains bound to Neu5Gc alpha2,3 Gal beta OMe

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 6 residues within 4Å: Chain A: E.28, D.53, N.54, S.55, D.127, N.131 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.54, A:D.127, A:D.127 NA.2: 6 residues within 4Å: Chain A: N.155, E.156, Y.158, D.159, P.160, D.217 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.158

1 x USR: methyl 3-O-[3,5-dideoxy-5-(2-hydroxyacetamido)-L-glycero-alpha-D-gulo-non-2-ulopyranonosyl]-beta-D-talopyranoside

USR.3: 13 residues within 4Å: Chain A: N.65, V.66, E.67, S.76, K.116, S.117, Y.118, Y.119, T.120, R.121, Y.122, D.137, R.146 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.118 Hydrogen bonds: A:S.76, A:S.76, A:K.116, A:Y.118, A:Y.119, A:T.120, A:R.121, A:R.121, A:Y.122, A:Y.122 Water bridges: A:N.65, A:V.66, A:N.114, A:T.120, A:T.120, A:R.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stubbs, H.E. et al., Hsa Siglec + Unique domains bound to Neu5Gc alpha2,3 Gal beta OMe. To Be Published

Release Date

2024-05-15

Peptides

Streptococcal hemagglutinin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Streptococcal hemagglutinin

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