SMTL ID : 8sth.1

human STING with diABZI agonist 15

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

homo-dimer

Ligands

2 x WWU: 1-[(2E)-4-{5-carbamoyl-2-[(4-ethyl-2-methyl-1,3-oxazole-5-carbonyl)amino]-7-(3-hydroxypropoxy)-1H-benzimidazol-1-yl}but-2-en-1-yl]-2-[(4-ethyl-2-methyl-1,3-oxazole-5-carbonyl)amino]-7-methoxy-1H-benzimidazole-5-carboxamide(Non-covalent)

WWU.1: 23 residues within 4Å: Chain A: L.7, S.10, Y.11, G.14, Y.15, V.87, Y.88, S.89, N.90, T.111, P.112 Chain B: L.7, S.10, Y.11, G.14, Y.15, V.87, Y.88, S.89, N.90, T.111, P.112 Ligands: WWU.2 19 PLIP interactions: 10 interactions with chain B, 9 interactions with chain A Hydrophobic interactions: B:Y.15, B:Y.88, B:P.112, A:Y.15, A:Y.88, A:P.112 Hydrogen bonds: B:Y.15, B:S.89, B:N.90, A:Y.15, A:S.89, A:T.111 Water bridges: B:Y.88, B:T.111, B:T.111, A:S.89, A:N.90 pi-Stacking: B:Y.15, A:Y.15 WWU.2: 23 residues within 4Å: Chain A: L.7, S.10, Y.11, G.14, Y.15, V.87, Y.88, S.89, N.90, T.111, P.112 Chain B: L.7, S.10, Y.11, G.14, Y.15, V.87, Y.88, S.89, N.90, T.111, P.112 Ligands: WWU.1 19 PLIP interactions: 10 interactions with chain B, 9 interactions with chain A Hydrophobic interactions: B:Y.15, B:Y.88, B:P.112, A:Y.15, A:Y.88, A:P.112 Hydrogen bonds: B:S.89, A:Y.15, A:Y.15, A:S.89, A:N.90, A:T.111 Water bridges: B:Y.88, B:S.89, B:N.90, B:T.111, B:T.111 pi-Stacking: B:Y.15, A:Y.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Duvall, J.R. et al., Discovery and Optimization of a STING Agonist Platform for Application in Antibody Drug Conjugates. J.Med.Chem. (2023)

Release Date

2023-07-26

Peptides

Stimulator of interferon genes protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Stimulator of interferon genes protein

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