SMTL ID : 8su3.1

F95S epi-Isozizaene Synthase: complex with 3 Mg2+, inorganic pyrophosphate, and benzyl triethyl ammonium cation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.29 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.184, H.185, R.241, K.242, R.247 Ligands: GOL.3 8 PLIP interactions: 8 interactions with chain A Water bridges: A:H.185, A:K.242, A:R.247 Salt bridges: A:R.184, A:H.185, A:R.241, A:K.242, A:R.247

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: Y.84, L.88, G.358, M.361, S.364, W.365, Y.373 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.358, A:S.364 GOL.3: 4 residues within 4Å: Chain A: H.185, W.222, R.247 Ligands: SO4.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.185

3 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 5 residues within 4Å: Chain A: R.215, N.261, S.265, E.269 Ligands: POP.7 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.265, A:E.269, H2O.3 MG.5: 5 residues within 4Å: Chain A: D.120, K.268, R.359 Ligands: MG.6, POP.7 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.120, H2O.2, H2O.3, H2O.5 MG.6: 5 residues within 4Å: Chain A: D.120, Y.193, E.196 Ligands: MG.5, POP.7 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.120, H2O.1, H2O.2, H2O.3, H2O.3

1 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.7: 12 residues within 4Å: Chain A: D.120, R.215, N.261, S.265, K.268, E.269, R.359, Y.360 Ligands: MG.4, MG.5, MG.6, BTM.8 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.261, A:S.265 Water bridges: A:R.215, A:K.268, A:K.268, A:K.268, A:R.359 Salt bridges: A:R.215, A:K.268, A:R.359

1 x BTM: N-benzyl-N,N-diethylethanaminium(Non-covalent)

BTM.8: 13 residues within 4Å: Chain A: L.93, S.116, F.117, D.120, Y.193, T.218, F.219, W.224, N.261, F.353, H.354, Y.360 Ligands: POP.7 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.93, A:F.117, A:D.120, A:F.219, A:F.219, A:W.224, A:F.353 pi-Stacking: A:F.117 pi-Cation interactions: A:F.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eaton, S.A. et al., Reprogramming the Cyclization Cascade of epi -Isozizaene Synthase to Generate Alternative Terpene Products. Biochemistry (2023)

Release Date

2023-07-26

Peptides

Epi-isozizaene synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epi-isozizaene synthase