SMTL ID : 8sur.1

TMEM16F bound with Niclosamide

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG.1: 1 residues within 4Å: Chain B: N.778 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain B: P.340, G.344, Q.345, R.360, N.362 No protein-ligand interaction detected (PLIP)

5 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: E.624, E.667, E.670, E.699, D.703, K.706 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.624, A:E.667, A:E.667, A:E.670, A:E.699 CA.4: 4 residues within 4Å: Chain A: E.395, S.854, I.857, D.859 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:S.854, A:I.857, A:D.859 CA.8: 5 residues within 4Å: Chain B: E.624, E.667, E.670, E.699, D.703 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.624, B:E.667, B:E.670, B:E.699, B:D.703 CA.9: 7 residues within 4Å: Chain B: A.617, N.620, N.621, E.624, E.670, N.695, E.699 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.670, B:E.699, B:E.699 CA.10: 5 residues within 4Å: Chain B: E.395, K.398, S.854, I.857, D.859 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.395, B:S.854, B:I.857, B:D.859, B:D.859

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 6 residues within 4Å: Chain A: P.340, G.344, Q.345, R.360, N.362, I.363 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.345, A:N.362 NAG.6: 4 residues within 4Å: Chain A: N.785, T.787, T.805, L.806 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.785 NAG.7: 3 residues within 4Å: Chain A: N.778, V.783, R.808 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.778, A:R.808

1 x VUT: 5-chloro-N-(2-chloro-4-nitrophenyl)-2-hydroxybenzamide(Non-covalent)

VUT.11: 9 residues within 4Å: Chain B: F.321, K.370, F.374, M.507, I.511, L.603, T.607, T.610, F.685 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.374 Hydrogen bonds: B:T.610

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feng, S. et al., Identification of a drug binding pocket in TMEM16F calcium-activated ion channel and lipid scramblase. Nat Commun (2023)

Release Date

2023-09-06

Peptides

Anoctamin-6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Anoctamin-6

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