SMTL ID : 8sv9.1 (1 other biounit)

Crystal structure of ULK1 kinase domain with inhibitor MR-2088

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x WXH: (4P)-4-[(2P)-2-(1,2,5,6-tetrahydropyridin-3-yl)-1H-pyrrolo[2,3-b]pyridin-5-yl]-N-(2,2,2-trifluoroethyl)thiophene-2-carboxamide(Non-covalent)

WXH.1: 19 residues within 4Å: Chain A: I.22, G.23, H.24, G.25, A.28, V.30, A.44, K.46, M.92, E.93, Y.94, C.95, N.96, G.98, Q.142, N.143, L.145, R.152, D.165 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.22, A:I.22, A:I.22, A:L.145 Hydrogen bonds: A:Y.94, A:C.95, A:N.96, A:R.152, A:R.152, A:D.165 Water bridges: A:Y.94

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: K.55 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.55 SO4.3: 2 residues within 4Å: Chain A: R.127, H.274 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.127, A:H.274 SO4.4: 3 residues within 4Å: Chain A: Q.196, K.237, R.261 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.196 Salt bridges: A:K.237, A:R.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morozova, A. et al., Development of potent and selective ULK1/2 inhibitors based on 7-azaindole scaffold with favorable in vivo properties. Eur.J.Med.Chem. (2024)

Release Date

2024-03-27

Peptides

Serine/threonine-protein kinase ULK1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase ULK1

Related Entries With Identical Sequence