SMTL ID : 8svx.1

Crystal structure of the L428V mutant of pregnane X receptor ligand binding domain in complex with SJPYT-331

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

homo-dimer

Ligands

2 x WU6: methyl 3-{[(1P)-1-(2,5-dimethoxyphenyl)-5-methyl-1H-1,2,3-triazole-4-carbonyl]amino}-4-{[(3S)-hexan-3-yl]oxy}benzoate(Non-covalent)

WU6.1: 16 residues within 4Å: Chain A: L.87, V.89, M.121, S.125, F.129, A.158, F.159, Q.163, F.166, W.177, Y.184, M.201, H.205, H.285, T.286, F.307 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.87, A:V.89, A:F.159, A:F.166, A:F.166, A:W.177, A:W.177, A:W.177, A:Y.184, A:F.307, A:F.307 Hydrogen bonds: A:V.89, A:S.125, A:Q.163 WU6.3: 18 residues within 4Å: Chain B: L.87, V.89, L.117, L.118, M.121, S.125, A.158, F.159, Q.163, F.166, W.177, Y.184, M.201, H.205, H.285, T.286, M.303, F.307 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:V.89, B:F.159, B:F.166, B:F.166, B:W.177, B:W.177, B:W.177, B:Y.184, B:F.307, B:F.307 Hydrogen bonds: B:S.125, B:Q.163

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 3 residues within 4Å: Chain A: W.101 Chain B: V.55, W.101 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A pi-Cation interactions: B:W.101, B:W.101, A:W.101, A:W.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia-Maldonado, E. et al., Chemical manipulation of an activation/inhibition switch in the nuclear receptor PXR. Nat Commun (2024)

Release Date

2024-05-15

Peptides

Nuclear receptor subfamily 1 group I member 2, Nuclear receptor coactivator 1 fusion protein,Nuclear receptor coactivator 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nuclear receptor subfamily 1 group I member 2, Nuclear receptor coactivator 1 fusion protein,Nuclear receptor coactivator 1

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