SMTL ID : 8swe.2 (1 other biounit)

FGFR2 Kinase Domain Bound to Reversible Inhibitor Cmpd 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 11 residues within 4Å: Chain A: K.74, R.173, L.195, R.197, I.202, T.208, T.209, N.210, G.211, R.212, L.213 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.173, A:R.173, A:R.197, A:N.210, A:G.211, A:R.212, A:R.212, A:R.212 Water bridges: A:R.197, A:T.209 GOL.2: 4 residues within 4Å: Chain A: Y.156, D.306, L.309, T.310 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.156 GOL.3: 2 residues within 4Å: Chain A: E.73, L.76 No protein-ligand interaction detected (PLIP)

1 x WXQ: N-{4-[4-amino-5-(4-methoxyphenyl)-7-methyl-7H-pyrrolo[2,3-d]pyrimidin-6-yl]phenyl}prop-2-enamide(Non-covalent)

WXQ.4: 22 residues within 4Å: Chain A: L.35, G.36, G.38, C.39, F.40, V.43, A.63, K.65, E.82, M.86, I.96, V.110, V.112, E.113, Y.114, A.115, S.116, G.118, N.119, L.181, A.191, D.192 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.40, A:V.43, A:V.43, A:V.112, A:L.181 Hydrogen bonds: A:K.65, A:E.113, A:A.115 pi-Cation interactions: A:K.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schonherr, H. et al., Discovery of lirafugratinib (RLY-4008), a highly selective irreversible small-molecule inhibitor of FGFR2. Proc.Natl.Acad.Sci.USA (2024)

Release Date

2024-02-14

Peptides

Fibroblast growth factor receptor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Fibroblast growth factor receptor 2

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