SMTL ID : 8swh.1

Local refinement of SARS-CoV-2 (HP-GSAS-Mut7) spike NTD in complex with TXG-0078 Fab

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 5 residues within 4Å: Chain A: N.122, A.123, T.124, N.125, V.171 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.171 Hydrogen bonds: A:N.125

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: C.15, N.17, N.137 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.137 NAG.3: 1 residues within 4Å: Chain A: N.149 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hurtado, J. et al., Deep repertoire mining uncovers ultra-broad coronavirus neutralizing antibodies targeting multiple spike epitopes. Cell Rep (2024)

Release Date

2024-05-22

Peptides

Spike glycoprotein: A
TXG-0078 Fab Heavy chain: B
TXG-0078 Fab Light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Spike glycoprotein

TXG-0078 Fab Heavy chain

TXG-0078 Fab Light chain

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