SMTL ID : 8sxt.1

Structure of LINE-1 ORF2p with template:primer hybrid

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x TTP: THYMIDINE-5'-TRIPHOSPHATE(Non-covalent)

TTP.1: 13 residues within 4Å: Chain A: C.13 Chain B: A.4, G.5 Chain C: K.519, R.531, A.601, E.602, K.603, F.605, Q.659, D.702, K.737 Ligands: MG.2 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:R.531, C:R.531, C:K.603, C:F.605 Salt bridges: C:K.519, C:K.519, C:K.737, C:K.737 pi-Cation interactions: C:R.531

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain C: D.600, A.601, D.702 Ligands: TTP.1 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.600, C:A.601

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baldwin, E.T. et al., Structures, functions and adaptations of the human LINE-1 ORF2 protein. Nature (2024)

Release Date

2024-01-10

Peptides

LINE-1 retrotransposable element ORF2 protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

LINE-1 retrotransposable element ORF2 protein

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