SMTL ID : 8szb.1

Cryo-EM Structure of NINJ2 Filament at 3.07 Angstrom Resolution

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x CLR: CHOLESTEROL(Non-covalent)

CLR.1: 3 residues within 4Å: Chain A: N.131, I.135, L.136 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.131, A:I.135, A:L.136 CLR.2: 5 residues within 4Å: Chain B: Q.128, N.131, A.132, I.135, L.136 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:N.131, B:I.135, B:I.135, B:L.136 CLR.3: 3 residues within 4Å: Chain C: N.131, I.135, L.136 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:N.131, C:I.135, C:I.135, C:L.136 CLR.4: 3 residues within 4Å: Chain D: N.131, I.135, L.136 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:N.131, D:I.135, D:I.135, D:L.136 Hydrogen bonds: D:N.131 CLR.5: 5 residues within 4Å: Chain D: V.111 Chain E: N.131, A.132, I.135, L.136 5 PLIP interactions: 4 interactions with chain E, 1 interactions with chain D Hydrophobic interactions: E:N.131, E:I.135, E:L.136, D:V.111 Hydrogen bonds: E:N.131 CLR.6: 4 residues within 4Å: Chain F: N.131, I.135, L.136, F.139 5 PLIP interactions: 5 interactions with chain F Hydrophobic interactions: F:N.131, F:I.135, F:L.136, F:F.139 Hydrogen bonds: F:N.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sahoo, B. et al., How NINJ1 mediates plasma membrane rupture and why NINJ2 cannot. Biorxiv (2023)

Release Date

2023-06-14

Peptides

Ninjurin-2: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
A

C
C

D
E

E
D

F
B

Ninjurin-2