SMTL ID : 8szz.1

CryoEM Structure of Computationally Designed Nanocage O32-ZL4

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-24-24-mer

Ligands

24 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain E: E.73, C.76, K.103 Ligand excluded by PLIP NA.2: 3 residues within 4Å: Chain F: E.73, C.76, K.103 Ligand excluded by PLIP NA.3: 3 residues within 4Å: Chain G: E.73, C.76, K.103 Ligand excluded by PLIP NA.4: 4 residues within 4Å: Chain H: E.73, C.76, A.77, K.103 Ligand excluded by PLIP NA.5: 3 residues within 4Å: Chain I: E.73, C.76, K.103 Ligand excluded by PLIP NA.6: 2 residues within 4Å: Chain J: E.73, C.76 Ligand excluded by PLIP NA.7: 2 residues within 4Å: Chain K: E.73, C.76 Ligand excluded by PLIP NA.8: 2 residues within 4Å: Chain Q: E.73, C.76 Ligand excluded by PLIP NA.9: 3 residues within 4Å: Chain U: E.73, C.76, F.99 Ligand excluded by PLIP NA.10: 4 residues within 4Å: Chain V: E.73, C.76, F.99, K.103 Ligand excluded by PLIP NA.11: 3 residues within 4Å: Chain W: C.76, F.99, K.103 Ligand excluded by PLIP NA.12: 3 residues within 4Å: Chain X: E.73, C.76, A.77 Ligand excluded by PLIP NA.13: 4 residues within 4Å: Chain Y: E.73, C.76, F.99, K.103 Ligand excluded by PLIP NA.14: 5 residues within 4Å: Chain Z: E.73, C.76, A.77, F.99, K.103 Ligand excluded by PLIP NA.15: 4 residues within 4Å: Chain 0: E.73, C.76, A.77, F.99 Ligand excluded by PLIP NA.16: 4 residues within 4Å: Chain 1: E.73, C.76, A.77, K.103 Ligand excluded by PLIP NA.17: 2 residues within 4Å: Chain 2: E.73, C.76 Ligand excluded by PLIP NA.18: 2 residues within 4Å: Chain 3: C.76, K.103 Ligand excluded by PLIP NA.19: 4 residues within 4Å: Chain 4: E.73, C.76, F.99, K.103 Ligand excluded by PLIP NA.20: 3 residues within 4Å: Chain 5: E.73, C.76, K.103 Ligand excluded by PLIP NA.21: 5 residues within 4Å: Chain 6: E.73, C.76, A.77, F.99, K.103 Ligand excluded by PLIP NA.22: 3 residues within 4Å: Chain 7: E.73, C.76, K.103 Ligand excluded by PLIP NA.23: 4 residues within 4Å: Chain 8: C.76, V.80, F.99, K.103 Ligand excluded by PLIP NA.24: 4 residues within 4Å: Chain 9: E.73, C.76, F.99, K.103 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Z. et al., Accurate computational design of three-dimensional protein crystals. Nat Mater (2023)

Release Date

2023-11-01

Peptides

O32-ZL4 Component A: ABCDLMNOPRSTabcdefghijkl
O32-ZL4 Component B: EFGHIJKQUVWXYZ0123456789

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
0

B
1

C
2

D
3

L
P

M
Q

N
R

O
S

P
T

R
V

S
W

T
X

a
o

b
p

c
q

d
r

e
s

f
t

g
u

h
v

i
w

j
x

k
y

l
z

E
I

F
J

G
K

H
L

I
M

J
N

K
O

Q
U

U
Y

V
Z

W
a

X
b

Y
c

Z
d

0
e

1
f

2
g

3
h

4
i

5
j

6
k

7
l

8
m

9
n

O32-ZL4 Component A

O32-ZL4 Component B