SMTL ID : 8t1d.1

Open-state cryo-EM structure of full-length human TRPV4 in complex with agonist 4a-PDD

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x XS9: (1aR,1bS,4aS,7aS,7bS,8R,9R,9aS)-9a-(decanoyloxy)-4a,7b-dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1a,1b,4,4a,5,7a,7b,8,9,9a-decahydro-1H-cyclopropa[3,4]benzo[1,2-e]azulen-9-yl decanoate(Non-covalent)

XS9.1: 14 residues within 4Å: Chain A: N.474, S.477, Y.478, A.481, T.520, F.524, T.527, Q.550, Y.553, Y.591, F.592, D.743, S.747, F.748 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.478, A:Y.478, A:A.481, A:T.520, A:F.524, A:Y.591, A:F.748 Hydrogen bonds: A:N.474, A:Q.550 XS9.2: 14 residues within 4Å: Chain B: V.469, S.470, N.474, S.477, Y.478, A.481, T.520, L.523, F.524, T.527, Y.553, F.592, S.747, F.748 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:V.469, B:N.474, B:Y.478, B:A.481, B:T.520, B:L.523, B:L.523, B:F.524, B:F.524, B:T.527, B:Y.553, B:F.592, B:F.592, B:F.748, B:F.748 Hydrogen bonds: B:N.474, B:S.477, B:T.527, B:T.527 XS9.3: 14 residues within 4Å: Chain C: N.474, S.477, Y.478, A.481, T.520, F.524, T.527, Q.550, Y.553, Y.591, F.592, D.743, S.747, F.748 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:Y.478, C:Y.478, C:A.481, C:T.520, C:F.524, C:Y.591, C:F.748 Hydrogen bonds: C:N.474, C:Q.550 XS9.4: 14 residues within 4Å: Chain D: V.469, S.470, N.474, S.477, Y.478, A.481, T.520, L.523, F.524, T.527, Y.553, F.592, S.747, F.748 19 PLIP interactions: 19 interactions with chain D Hydrophobic interactions: D:V.469, D:N.474, D:Y.478, D:A.481, D:T.520, D:L.523, D:L.523, D:F.524, D:F.524, D:T.527, D:Y.553, D:F.592, D:F.592, D:F.748, D:F.748 Hydrogen bonds: D:N.474, D:S.477, D:T.527, D:T.527

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nadezhdin, K.D. et al., Structure of human TRPV4 in complex with GTPase RhoA. Nat Commun (2023)

Release Date

2023-07-05

Peptides

Transient receptor potential cation channel subfamily V member 4/Enhanced green fluorescent protein chimera: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 4/Enhanced green fluorescent protein chimera

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