SMTL ID : 8t1f.1

Cryo-EM structure of full-length human TRPV4 in complex with antagonist HC-067047

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x X7N: 2-methyl-1-[3-(morpholin-4-yl)propyl]-5-phenyl-N-[3-(trifluoromethyl)phenyl]-1H-pyrrole-3-carboxamide(Non-covalent)

X7N.1: 13 residues within 4Å: Chain A: N.474, S.477, Y.478, T.520, F.524, D.546, F.549, Q.550, Y.553, Y.591, F.592, D.743 Ligands: POV.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.478, A:F.524, A:Y.553, A:F.592, A:F.592, A:D.743 Hydrogen bonds: A:N.474 Salt bridges: A:D.546 pi-Stacking: A:F.592 X7N.3: 17 residues within 4Å: Chain B: F.471, N.474, S.477, Y.478, A.481, T.520, F.524, D.546, F.549, Q.550, Y.553, Y.591, F.592, T.740, D.743, I.744 Ligands: POV.4 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:F.471, B:N.474, B:Y.478, B:F.524, B:Y.553, B:F.592, B:F.592, B:T.740, B:D.743, B:I.744 Hydrogen bonds: B:N.474 Salt bridges: B:D.546 pi-Stacking: B:Y.591, B:F.592 X7N.5: 15 residues within 4Å: Chain C: F.471, N.474, S.477, Y.478, A.481, T.520, F.524, D.546, F.549, Q.550, Y.553, Y.591, F.592, D.743 Ligands: POV.6 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:F.471, C:Y.478, C:F.524, C:Y.553, C:Y.553, C:F.592, C:F.592, C:D.743 Hydrogen bonds: C:N.474 Salt bridges: C:D.546 pi-Stacking: C:Y.591, C:F.592 X7N.7: 17 residues within 4Å: Chain D: F.471, N.474, S.477, Y.478, A.481, T.520, F.524, D.546, F.549, Q.550, Y.553, Y.591, F.592, T.740, D.743, I.744 Ligands: POV.8 14 PLIP interactions: 14 interactions with chain D Hydrophobic interactions: D:F.471, D:N.474, D:Y.478, D:F.524, D:Y.553, D:F.592, D:F.592, D:T.740, D:D.743, D:I.744 Hydrogen bonds: D:N.474 Salt bridges: D:D.546 pi-Stacking: D:Y.591, D:F.592

4 x POV: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate(Non-covalent)

POV.2: 8 residues within 4Å: Chain A: V.469, S.470, N.474, S.747, F.748, L.752, F.756 Ligands: X7N.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.469, A:L.752, A:F.756 Hydrogen bonds: A:S.470, A:N.474 POV.4: 13 residues within 4Å: Chain B: R.464, K.465, V.469, S.470, I.473, N.474, T.527, D.531, D.743, S.747, F.748, P.749 Ligands: X7N.3 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:V.469, B:V.469, B:I.473 Hydrogen bonds: B:N.474, B:N.474, B:S.747 Salt bridges: B:D.531, B:D.743 POV.6: 7 residues within 4Å: Chain C: V.469, S.470, N.474, S.747, F.748, L.752 Ligands: X7N.5 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:V.469, C:L.752 Hydrogen bonds: C:S.470, C:N.474 POV.8: 12 residues within 4Å: Chain D: R.464, K.465, V.469, S.470, I.473, N.474, T.527, D.531, S.747, F.748, P.749 Ligands: X7N.7 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:V.469, D:I.473 Hydrogen bonds: D:N.474, D:N.474, D:S.747 Salt bridges: D:D.531

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nadezhdin, K.D. et al., Structure of human TRPV4 in complex with GTPase RhoA. Nat Commun (2023)

Release Date

2023-07-05

Peptides

Transient receptor potential cation channel subfamily V member 4/Enhanced green fluorescent protein chimera: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Transient receptor potential cation channel subfamily V member 4/Enhanced green fluorescent protein chimera

Related Entries With Identical Sequence