SMTL ID : 8t1v.1

Crystal structure of orphan G protein-coupled receptor 6 with bound inverse agonist 3h

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x XY8: 3-{4-[(2,4-difluorophenyl)methyl]piperazin-1-yl}-7-methyl-N-(propan-2-yl)pyrido[3,4-b]pyrazin-2-amine(Non-covalent)

XY8.1: 18 residues within 4Å: Chain A: L.59, A.101, H.108, L.128, V.129, F.132, V.199, L.202, V.207, L.210, S.211, W.366, F.369, A.370, C.373, L.389, A.392, T.393 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.59, A:A.101, A:L.128, A:F.132, A:F.132, A:L.210, A:W.366, A:L.389, A:A.392, A:T.393 pi-Stacking: A:F.369

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: D.98, S.135, F.362, N.395, N.399 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.135, A:W.366, A:N.399

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barekatain, M. et al., Structural insights into the high basal activity and inverse agonism of the orphan receptor GPR6 implicated in Parkinson's disease. Sci.Signal. (2024)

Release Date

2024-12-04

Peptides

G-protein coupled receptor 6, Soluble cytochrome b562 chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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G-protein coupled receptor 6, Soluble cytochrome b562 chimera

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