SMTL ID : 8t2j.1

Structure of the catalytic domain of PPM1D/Wip1 serine/threonine phosphatase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.47, G.48 Ligands: MG.2 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.47, A:G.48, H2O.2, H2O.2, H2O.3, H2O.4 MG.2: 4 residues within 4Å: Chain A: D.47, D.256, D.308 Ligands: MG.1 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.47, A:D.256, A:D.308, H2O.2, H2O.2, H2O.3

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 5 residues within 4Å: Chain A: R.18, H.49, R.185, L.211, A.212 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.18, A:R.18, A:R.185, A:F.210, A:A.212 Water bridges: A:E.22

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: A.35, R.123, G.124, K.126 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.123, A:M.125 GOL.5: 2 residues within 4Å: Chain A: Y.279, L.280 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.280

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, J.P. et al., Crystal structure and mechanistic studies of the PPM1D serine/threonine phosphatase catalytic domain. J.Biol.Chem. (2024)

Release Date

2024-06-12

Peptides

Protein phosphatase 1D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein phosphatase 1D