SMTL ID : 8t35.1

Crystal structure of K51 acetylated LC3A in complex with the LIR of TP53INP2/DOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: I.78, R.81 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.81 EDO.2: 5 residues within 4Å: Chain A: Q.128, E.129, T.130 Chain B: F.92, V.103 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.129 EDO.3: 10 residues within 4Å: Chain A: Y.50, F.92, L.94, H.98, A.126, S.127, Q.128, T.130 Chain B: M.100, V.101 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.50, A:S.127 EDO.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.5: 10 residues within 4Å: Chain A: M.72, V.76, F.91, F.92, L.93, M.100, V.101, V.103 Chain B: Q.128, E.129 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.93, A:L.93 EDO.6: 5 residues within 4Å: Chain B: Q.38, H.39, P.40, S.41, K.42 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.41 EDO.7: 2 residues within 4Å: Chain B: R.81, R.82 1 PLIP interactions: 1 interactions with chain B Water bridges: B:R.81 EDO.8: 5 residues within 4Å: Chain B: R.23, D.27, K.30, E.31, K.63 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ali, M.G. et al., Structural and functional characterization of the role of acetylation on the interactions of the human Atg8-family proteins with the autophagy receptor TP53INP2/DOR. Autophagy (2024)

Release Date

2024-05-22

Peptides

Tumor protein p53-inducible nuclear protein 2,Microtubule-associated proteins 1A/1B light chain 3A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tumor protein p53-inducible nuclear protein 2,Microtubule-associated proteins 1A/1B light chain 3A